8YZK image
Deposition Date 2024-04-07
Release Date 2024-07-03
Last Version Date 2025-07-23
Entry Detail
PDB ID:
8YZK
Title:
Orphan receptor GPRC5D in complex with scFv150-18
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Soluble cytochrome b562,G-protein coupled receptor family C group 5 member D
Gene (Uniprot):cybC, GPRC5D
Chain IDs:A, D (auth: B)
Chain Length:421
Number of Molecules:2
Biological Source:Escherichia coli, Homo sapiens
Polymer Type:polypeptide(L)
Molecule:scFv
Chain IDs:B (auth: C), C (auth: D)
Chain Length:288
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
The binding mechanism of an anti-multiple myeloma antibody to the human GPRC5D homodimer.
Nat Commun 15 5255 5255 (2024)
PMID: 38898050 DOI: 10.1038/s41467-024-49625-y

Abstact

GPRC5D is an atypical Class C orphan G protein-coupled receptor. Its high expression on the surface of multiple myeloma cells has rendered it an attractive target for therapeutic interventions, including monoclonal antibodies, CAR-T cells, and T-cell engagers. Despite its therapeutic potential, the insufficient understanding regarding of the receptor's structure and antibody recognition mechanism has impeded the progress of effective therapeutic development. Here, we present the structure of GPRC5D in complex with a preclinical-stage single-chain antibody (scFv). Our structural analysis reveals that the GPRC5D presents a close resemblance to the typical Class C GPCRs in the transmembrane region. We identify a distinct head-to-head homodimer arrangement and interface mainly involving TM4, setting it apart from other Class C homo- or hetero-dimers. Furthermore, we elucidate the binding site engaging a sizable extracellular domain on GPRC5D for scFv recognition. These insights not only unveil the distinctive dimer organization of this unconventional Class C GPCR but also hold the potential to advance drug development targeting GPRC5D for the treatment of multiple myeloma.

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Disease

Primary Citation of related structures