8YY6 image
Deposition Date 2024-04-03
Release Date 2025-10-15
Last Version Date 2025-10-15
Entry Detail
PDB ID:
8YY6
Title:
Structure of a murine monoclonal antibody Fab5 targeting Epstein-Barr virus gB
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:BALF4
Gene (Uniprot):BALF4
Chain IDs:C (auth: A), F (auth: B), I (auth: C)
Chain Length:667
Number of Molecules:3
Biological Source:human gammaherpesvirus 4
Polymer Type:polypeptide(L)
Molecule:Fab5 H chain
Chain IDs:A (auth: D), D (auth: E), G
Chain Length:224
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Fab5 L chain
Chain IDs:B (auth: F), E (auth: H), H (auth: I)
Chain Length:213
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Chimeric Glycoprotein Nanoparticles Elicit Robust Neutralizing Antibodies Against Epstein-Barr Virus.
Adv Mater ? e07012 e07012 (2025)
PMID: 41045177 DOI: 10.1002/adma.202507012

Abstact

Epstein‒Barr virus (EBV) is a ubiquitous gammaherpesvirus linked to a broad spectrum of malignancies and autoimmune diseases with no approved therapeutic drugs or vaccines. EBV infection relies on the viral glycoproteins gB and gHgL, which, together, function as the fusion apparatus, mediating viral recognition and membrane fusion in both epithelial and B cells. Despite discovering potent neutralizing antibodies targeting gB and gHgL, the heterogeneous antigen structures and distribution of multiple glycoproteins in the virion hinder rational vaccine design targeting this apparatus complex. In this study, Chimeric nanoparticles (Chimeric-NPs) are designed that co-display EBV fusion apparatus and induce significantly more neutralizing antibodies in mice and nonhuman primates than the cocktail counterparts. It is further demonstrated that the Chimeric-NPs elicited neutralizing antibodies predominantly targeting gB, closely mimicking the antibody induction pattern by the whole EBV virion. Additionally, single-BCR sequencing is used to analyze the B cell response to Chimeric-NP, and a novel gB neutralizing antibody Fab5 targeting a new vulnerable site EBV gB is identified. These findings provide novel candidates and vaccine design strategies for EBV and reveal the underlying mechanisms of antibody induction and immune response regulation by chimera vaccines, with potential implications for all multi-antigen-harbored pathogens.

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Primary Citation of related structures
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