8YX9 image
Entry Detail
PDB ID:
8YX9
Keywords:
Title:
CD40 in complex with Dacetuzumab Fab
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-04-02
Release Date:
2024-05-08
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.26
R-Value Work:
0.20
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Tumor necrosis factor receptor superfamily member 5
Chain IDs:I (auth: A), J (auth: D), K (auth: J), L (auth: K)
Chain Length:179
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Dacetuzumab, Heavy chain
Chain IDs:A (auth: H), C (auth: B), E, G
Chain Length:223
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Dacetuzumab, light chain
Chain IDs:B (auth: L), D (auth: C), F, H (auth: I)
Chain Length:219
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Crystal structures of human CD40 in complex with monoclonal antibodies dacetuzumab and bleselumab.
Biochem.Biophys.Res.Commun. 714 149969 149969 (2024)
PMID: 38657446 DOI: 10.1016/j.bbrc.2024.149969

Abstact

CD40 is a member of the tumor necrosis factor receptor superfamily, and it is widely expressed on immune and non-immune cell types. The interaction between CD40 and the CD40 ligand (CD40L) plays an essential function in signaling, and the CD40/CD40L complex works as an immune checkpoint molecule. CD40 has become a therapeutic target, and a variety of agonistic/antagonistic anti-CD40 monoclonal antibodies (mAbs) have been developed. To better understand the mode of action of anti-CD40 mAbs, we determined the X-ray crystal structures of dacetuzumab (agonist) and bleselumab (antagonist) in complex with the extracellular domain of human CD40, respectively. The structure reveals that dacetuzumab binds to CD40 on the top of cysteine-rich domain 1 (CRD1), which is the domain most distant from the cell surface, and it does not compete with CD40L binding. The binding interface of bleselumab spread between CRD2 and CRD1, overlapping with the binding surface of the ligand. Our results offer important insights for future structural and functional studies of CD40 and provide clues to understanding the mechanism of biological response. These data can be applied to developing new strategies for designing antibodies with more therapeutic efficacy.

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Primary Citation of related structures