8YWQ image
Entry Detail
PDB ID:
8YWQ
Keywords:
Title:
Crystal structure of the Fab fragment of the anti-IL-6 antibody I9H in complex with a domain-swapped IL-6 dimer
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-03-31
Release Date:
2024-11-06
Method Details:
Experimental Method:
Resolution:
2.51 Å
R-Value Free:
0.27
R-Value Work:
0.23
R-Value Observed:
0.24
Space Group:
C 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Interleukin-6
Chain IDs:C (auth: A)
Chain Length:185
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Heavy chain of the Fab fragment of anti-IL-6 antibody I9H
Chain IDs:A (auth: H)
Chain Length:231
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Light chain of the Fab fragment of anti-IL-6 antibody I9H
Chain IDs:B (auth: L)
Chain Length:214
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural basis of signaling complex inhibition by IL-6 domain-swapped dimers.
Structure 33 171 180.e5 (2025)
PMID: 39566503 DOI: 10.1016/j.str.2024.10.028

Abstact

Interleukin-6 (IL-6) is a multifaceted cytokine essential in many immune system processes and their regulation. It also plays a key role in hematopoiesis, and in triggering the acute phase reaction. IL-6 overproduction is critical in chronic inflammation associated with autoimmune diseases like rheumatoid arthritis and contributes to cytokine storms in COVID-19 patients. Over 20 years ago, researchers proposed that IL-6, which is typically monomeric, can also form dimers via a domain-swap mechanism, with indirect evidence supporting their existence. The physiological significance of IL-6 dimers was shown in B-cell chronic lymphocytic leukemia. However, no structures have been reported so far. Here, we present the crystal structure of an IL-6 domain-swapped dimer that computational approaches could not predict. The structure explains why the IL-6 dimer is antagonistic to the IL-6 monomer in signaling complex formation and provides insights for IL-6 targeted therapies.

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