8YWA image
Deposition Date 2024-03-30
Release Date 2024-11-06
Last Version Date 2025-07-23
Entry Detail
PDB ID:
8YWA
Title:
The structure of IgE receptor binding to IgE
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.14 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:High affinity immunoglobulin epsilon receptor subunit alpha
Gene (Uniprot):FCER1A
Chain IDs:E (auth: A)
Chain Length:267
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:High affinity immunoglobulin epsilon receptor subunit beta
Gene (Uniprot):MS4A2
Chain IDs:F (auth: B)
Chain Length:283
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:High affinity immunoglobulin epsilon receptor subunit gamma
Gene (Uniprot):FCER1G
Chain IDs:G (auth: D), H (auth: C)
Chain Length:86
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Immunoglobulin heavy constant epsilon
Chain IDs:A (auth: H), B (auth: X)
Chain Length:261
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Immunoglobulin kappa constant
Chain IDs:C (auth: h), D (auth: x)
Chain Length:261
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Molecular mechanism of IgE-mediated Fc epsilon RI activation.
Nature 637 453 460 (2025)
PMID: 39442557 DOI: 10.1038/s41586-024-08229-8

Abstact

Allergic diseases affect more than a quarter of individuals in industrialized countries, and are a major public health concern1,2. The high-affinity Fc receptor for immunoglobulin E (FcεRI), which is mainly present on mast cells and basophils, has a crucial role in allergic diseases3-5. Monomeric immunoglobulin E (IgE) binding to FcεRI regulates mast cell survival, differentiation and maturation6-8. However, the underlying molecular mechanism remains unclear. Here we demonstrate that prior to IgE binding, FcεRI exists mostly as a homodimer on human mast cell membranes. The structure of human FcεRI confirms the dimeric organization, with each promoter comprising one α subunit, one β subunit and two γ subunits. The transmembrane helices of the α subunits form a layered arrangement with those of the γ and β subunits. The dimeric interface is mediated by a four-helix bundle of the α and γ subunits at the intracellular juxtamembrane region. Cholesterol-like molecules embedded within the transmembrane domain may stabilize the dimeric assembly. Upon IgE binding, the dimeric FcεRI dissociates into two protomers, each of which binds to an IgE molecule. This process elicits transcriptional activation of Egr1, Egr3 and Ccl2 in rat basophils, which can be attenuated by inhibiting the FcεRI dimer-to-monomer transition. Collectively, our study reveals the mechanism of antigen-independent, IgE-mediated FcεRI activation.

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Primary Citation of related structures