8YW2 image
Entry Detail
PDB ID:
8YW2
EMDB ID:
EMD-39620
Keywords:
VIRAL PROTEIN
Title:
Semliki Forest virus viron in complex with VLDLR
Biological Source:
Source Organism:
Homo sapiens, Semliki Forest virus 4
Host Organism:
Homo sapiens
PDB Version:
Deposition Date:
2024-03-29
Release Date:
2024-12-11
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
8YW2 validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Description:Spike glycoprotein E3
Chain IDs:A (auth: 0), C (auth: 2), L (auth: AA), M (auth: AB), Z (auth: L), AA (auth: M), BA (auth: N), GA (auth: S), OA (auth: a), PA (auth: b), QA (auth: c), UA (auth: g), YA (auth: l), HB (auth: u), IB (auth: v), JB (auth: w)
Chain Length:52
Number of Molecules:16
Biological Source:Semliki Forest virus 4
UniProt ID:P03315 Pfam ID:PF01563, PF00944, PF01589, PF00943
Protein Blast
Polymer Type:polypeptide(L)
Description:capsid protein, partial
Chain IDs:B (auth: 1), D (auth: 3), N (auth: AC), O (auth: AD), P (auth: AE), R (auth: D), CA (auth: O), DA (auth: P), EA (auth: Q), HA (auth: T), RA (auth: d), SA (auth: e), TA (auth: f), AB (auth: n), KB (auth: x), LB (auth: y)
Chain Length:161
Number of Molecules:16
Biological Source:Semliki Forest virus 4
UniProt ID:P03315 Pfam ID:PF01563, PF00944, PF01589, PF00943
Protein Blast
Polymer Type:polypeptide(L)
Description:Spike glycoprotein E1
Chain IDs:E (auth: 4), F (auth: 5), G (auth: 6), S (auth: E), T (auth: F), U (auth: G), V (auth: H), IA (auth: U), JA (auth: V), KA (auth: W), VA (auth: h), WA (auth: i), ZA (auth: m), BB (auth: o), CB (auth: p), DB (auth: q)
Chain Length:438
Number of Molecules:16
Biological Source:Semliki Forest virus 4
UniProt ID:P03315 Pfam ID:PF01563, PF00944, PF01589, PF00943
Protein Blast
Polymer Type:polypeptide(L)
Description:Spike glycoprotein E2
Chain IDs:H (auth: 7), I (auth: 8), J (auth: 9), Q (auth: B), W (auth: I), X (auth: J), Y (auth: K), FA (auth: R), LA (auth: X), MA (auth: Y), NA (auth: Z), XA (auth: j), EB (auth: r), FB (auth: s), GB (auth: t), MB (auth: z)
Chain Length:418
Number of Molecules:16
Biological Source:Semliki Forest virus 4
UniProt ID:P03315 Pfam ID:PF01563, PF00944, PF01589, PF00943
Protein Blast
Polymer Type:polypeptide(L)
Description:Very low-density lipoprotein receptor
Chain IDs:K (auth: A)
Chain Length:162
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P98155 Pfam ID:PF00057
Ligand Molecules
NA
Primary Citation
Structure of Semliki Forest virus in complex with VLDLR
To Be Published ? ? ? (?)
Primary Citation of related structures
8YW2