8YVP image
Entry Detail
PDB ID:
8YVP
EMDB ID:
Keywords:
Title:
canine immunoproteasome 20S subunit in complex with compound 1
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2024-03-29
Release Date:
2024-07-31
Method Details:
Experimental Method:
Resolution:
2.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Proteasome subunit beta type-7
Chain IDs:A (auth: B), K (auth: E)
Chain Length:234
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Proteasome subunit beta type-5
Chain IDs:B (auth: C), H (auth: D)
Chain Length:205
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Proteasome subunit beta type-6
Chain IDs:F, Y (auth: A)
Chain Length:264
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Proteasome subunit alpha type-5
Chain IDs:N (auth: H), W (auth: M)
Chain Length:241
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Proteasome subunit alpha type-7
Chain IDs:S (auth: I), Z (auth: N)
Chain Length:248
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Proteasome subunit alpha type-1
Chain IDs:T (auth: L), V (auth: G)
Chain Length:263
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Proteasome subunit alpha type-4
Chain IDs:U (auth: O), X (auth: Z)
Chain Length:261
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Proteasome subunit alpha type-2
Chain IDs:C (auth: P), P (auth: b)
Chain Length:234
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Proteasome subunit alpha type-3
Chain IDs:D (auth: Q), I (auth: J)
Chain Length:255
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Proteasome subunit alpha type-6
Chain IDs:E (auth: R), O (auth: K)
Chain Length:246
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Proteasome subunit beta type-1
Chain IDs:G (auth: S), L (auth: X)
Chain Length:240
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Proteasome subunit beta type-2
Chain IDs:Q (auth: V), R (auth: T)
Chain Length:201
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Proteasome subunit beta type-3
Chain IDs:J (auth: Y), AA (auth: U)
Chain Length:205
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Proteasome subunit beta type-4
Chain IDs:M (auth: a), BA (auth: W)
Chain Length:264
Number of Molecules:2
Biological Source:Mus musculus
Primary Citation
Optimization of alpha-amido boronic acids via cryo-electron microscopy analysis: Discovery of a novel highly selective immunoproteasome subunit LMP7 ( beta 5i)/LMP2 ( beta 1i) dual inhibitor.
Bioorg.Med.Chem. 109 117790 117790 (2024)
PMID: 38906067 DOI: 10.1016/j.bmc.2024.117790

Abstact

The immunoproteasome subunit LMP7 (β5i)/LMP2 (β1i) dual blockade has been reported to suppress B cell differentiation and activation, suggesting that the dual inhibition of LMP7/LMP2 is a promising approach for treating autoimmune diseases. In contrast, the inhibition of the constitutive proteasome subunit β5c correlates with cytotoxicity against non-immune cells. Therefore, LMP7/LMP2 dual inhibitors with high selectivity over β5c may be desirable for treating autoimmune diseases. In this study, we present the optimization and discovery of α-amido boronic acids using cryo-electron microscopy (cryo-EM). The exploitation of structural differences between the proteasome subunits led to the identification of a highly selective LMP7/LMP2 dual inhibitor 19. Molecular dynamics simulation based on cryo-EM structures of the proteasome subunits complexed with 19 explained the inhibitory activity profile. In mice immunized with 4-hydroxy-3-nitrophenylacetyl conjugated to ovalbumin, results indicate that 19 is orally bioavailable and shows promise as potential treatment for autoimmune diseases.

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