ISDA: 8YUC

Deposition Date 2024-03-27

Release Date 2025-10-01

Last Version Date 2025-10-01

Entry Detail

PDB ID:

8YUC

Keywords:

IMMUNE SYSTEM

Title:

Crystal structure of SARS-CoV-2 ConSp RBD in complex with antibodies PDI222 Fab and COVA1-16 Fab

Biological Source:

Source Organism:

Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)
Homo sapiens (Taxon ID: 9606)

Host Organism:

Spodoptera frugiperda

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

4.51 Å

R-Value Free:

0.30

R-Value Work:

0.27

R-Value Observed:

0.27

Space Group:

P 32 2 1

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Macromolecular Entities

Polymer Type:polypeptide(L)
Molecule:PDI222 heavy chain
Chain IDs:B (auth: A)
Chain Length:225
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:PDI222 light chain
Chain IDs:C (auth: B)
Chain Length:214
Number of Molecules:1
Biological Source:Homo sapiens

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Spike protein S2'
Gene (Uniprot):S
Chain IDs:A (auth: G)
Chain Length:196
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTC2 Pfam ID:PF09408

Polymer Type:polypeptide(L)
Molecule:COVA1-16 heavy chain
Chain IDs:D (auth: H)
Chain Length:231
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:COVA1-16 light chain
Chain IDs:E (auth: L)
Chain Length:213
Number of Molecules:1
Biological Source:Homo sapiens

Ligand Molecules

Primary Citation

Structure and antigenic characteristics of consensus sequence-based SARS-CoV-2 antigen

Kang, J.M, Yuan, M, Han, B.W, Wilson, I.A.Show

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Primary Citation of related structures

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