8YTD image
Deposition Date 2024-03-25
Release Date 2024-07-10
Last Version Date 2024-07-24
Entry Detail
PDB ID:
8YTD
Keywords:
Title:
Crystal Structure of TrkA D5 domain in complex with two different macrocyclic peptides
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.34 Å
R-Value Free:
0.27
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 43 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:High affinity nerve growth factor receptor
Gene (Uniprot):NTRK1
Chain IDs:A
Chain Length:102
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Macrocyclic Peptide
Chain IDs:B
Chain Length:15
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Molecule:Macrocyclic Peptide
Chain IDs:C
Chain Length:18
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Discovery and Hit to Lead Optimization of Macrocyclic Peptides as Novel Tropomyosin Receptor Kinase A Antagonists.
J.Med.Chem. 67 11197 11208 (2024)
PMID: 38950284 DOI: 10.1021/acs.jmedchem.4c00715

Abstact

Tropomyosin receptor kinases (Trks) are receptor tyrosine kinases activated by neurotrophic factors, called neurotrophins. Among them, TrkA interacts with the nerve growth factor (NGF), which leads to pain induction. mRNA-display screening was carried out to discover a hit compound 2, which inhibits protein-protein interactions between TrkA and NGF. Subsequent structure optimization improving phosphorylation inhibitory activity and serum stability was pursued using a unique process that took advantage of the peptide being synthesized by translation from mRNA. This gave peptide 19, which showed an analgesic effect in a rat incisional pain model. The peptides described here can serve as a new class of analgesics, and the structure optimization methods reported provide a strategy for discovering new peptide drugs.

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Primary Citation of related structures