8YR7 image
Deposition Date 2024-03-20
Release Date 2024-05-29
Last Version Date 2024-05-29
Entry Detail
PDB ID:
8YR7
Title:
Crystal structure of human dishevelled 2 (Dvl2) PDZ domain fused with WGEF internal peptide motif
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.33
R-Value Work:
0.29
R-Value Observed:
0.30
Space Group:
I 41
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Segment polarity protein dishevelled homolog DVL-2,Rho guanine nucleotide exchange factor 19
Gene (Uniprot):DVL2, ARHGEF19
Chain IDs:A
Chain Length:109
Number of Molecules:1
Biological Source:synthetic construct, Homo sapiens
Ligand Molecules
Primary Citation
Dishevelled2 activates WGEF via its interaction with a unique internal peptide motif of the GEF.
Commun Biol 7 543 543 (2024)
PMID: 38714795 DOI: 10.1038/s42003-024-06194-6

Abstact

The Wnt-planar cell polarity (Wnt-PCP) pathway is crucial in establishing cell polarity during development and tissue homoeostasis. This pathway is found to be dysregulated in many pathological conditions, including cancer and autoimmune disorders. The central event in Wnt-PCP pathway is the activation of Weak-similarity guanine nucleotide exchange factor (WGEF) by the adapter protein Dishevelled (Dvl). The PDZ domain of Dishevelled2 (Dvl2PDZ) binds and activates WGEF by releasing it from its autoinhibitory state. However, the actual Dvl2PDZ binding site of WGEF and the consequent activation mechanism of the GEF have remained elusive. Using biochemical and molecular dynamics studies, we show that a unique "internal-PDZ binding motif" (IPM) of WGEF mediates the WGEF-Dvl2PDZ interaction to activate the GEF. The residues at P2, P0, P-2 and P-3 positions of IPM play an important role in stabilizing the WGEFpep-Dvl2PDZ interaction. Furthermore, MD simulations of modelled Dvl2PDZ-WGEFIPM peptide complexes suggest that WGEF-Dvl2PDZ interaction may differ from the reported Dvl2PDZ-IPM interactions. Additionally, the apo structure of human Dvl2PDZ shows conformational dynamics different from its IPM peptide bound state, suggesting an induced fit mechanism for the Dvl2PDZ-peptide interaction. The current study provides a model for Dvl2 induced activation of WGEF.

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Primary Citation of related structures