8YR5 image
Deposition Date 2024-03-20
Release Date 2024-11-20
Last Version Date 2025-01-15
Entry Detail
PDB ID:
8YR5
Keywords:
Title:
Crystal structure of E. coli phosphatidylserine synthase in apo state
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.83 Å
R-Value Free:
0.28
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CDP-diacylglycerol--serine O-phosphatidyltransferase
Gene (Uniprot):pssA
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L
Chain Length:461
Number of Molecules:12
Biological Source:Escherichia coli str. K-12 substr. MG1655
Ligand Molecules
Primary Citation
Structural basis for membrane association and catalysis by phosphatidylserine synthase in Escherichia coli.
Sci Adv 10 eadq4624 eadq4624 (2024)
PMID: 39693441 DOI: 10.1126/sciadv.adq4624

Abstact

Phosphatidylserine synthase (PssA) is essential in the biosynthesis of phosphatidylethanolamine, a major phospholipid of bacterial membranes. A peripheral membrane protein PssA can associate with the cellular membrane in its active state or exist in the cytosol in an inactive form. The membrane-bound enzyme acts on cytidine diphosphate diacylglycerol (CDP-DG) to form cytidine monophosphate and a covalent intermediate, which is subsequently targeted by serine to produce phosphatidylserine. Here, we present two crystal structures of Escherichia coli PssA, one complexed with CDP-DG and the other without. The lipid-bound structure mimics the Michaelis complex before the formation of a covalent intermediate, revealing key determinants for substrate recognition and catalysis. Notably, membrane-free PssA is in a monomer-dimer equilibrium, with only the monomer capable of associating with the membrane, suggesting a regulatory mechanism for phospholipid biosynthesis dependent on the oligomerization state of the enzyme.

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Primary Citation of related structures