8YQ8 image
Entry Detail
PDB ID:
8YQ8
Keywords:
Title:
Quadruple mutant (N51I+C59R+S108N+I164L) Plasmodium falciparum dihydrofolate reductase-thymidylate synthase (PfDHFR-TS V1/S) complexed with FB8, NADPH and dUMP
Biological Source:
PDB Version:
Deposition Date:
2024-03-19
Release Date:
2024-09-11
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.24
R-Value Work:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Bifunctional dihydrofolate reductase-thymidylate synthase
Chain IDs:A, B
Chain Length:608
Number of Molecules:2
Biological Source:Plasmodium falciparum VS/1
Primary Citation
Novel flexible biphenyl Pf DHFR inhibitors with improved antimalarial activity.
Rsc Med Chem 15 2496 2507 (2024)
PMID: 39026651 DOI: 10.1039/d4md00197d

Abstact

As pregnant women and young children remain the first victims of malaria worldwide, the search for new antimalarials has been focusing on compounds with a high safety profile and extended efficacy. In a previous study, a rigid biphenyl PfDHFR inhibitor was developed by fragment-based screening, displaying sub nM enzyme inhibition but poor antiparasitic activity, presumably due to its low flexibility. Here, we report a new series of compounds that combines the biphenyl fragment with a flexible linker. Interestingly, their mode of binding differs from previously reported compounds, taking advantage of strong hydrophobic interaction. The new flexible biphenyl compounds show overall improved antiparasitic activity compared to rigid ones, with the best compound displaying a 2 nM antiplasmodial IC50 and suitable drug-like properties. This confirms the importance of compound flexibility for antimalarial activity and opens the way to new opportunities for antimalarial drug design.

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Primary Citation of related structures