8YPB image
Entry Detail
PDB ID:
8YPB
EMDB ID:
Keywords:
Title:
Cryo-EM structure of the LH1 complex from Allochromatium tepidum
Biological Source:
PDB Version:
Deposition Date:
2024-03-16
Release Date:
2025-02-19
Method Details:
Experimental Method:
Resolution:
2.45 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:LH1 alpha polypeptide
Chain IDs:B (auth: F), D (auth: B), F (auth: D), H (auth: G), J (auth: I), L (auth: K), N (auth: M), P (auth: O), R (auth: Q), T (auth: S), V (auth: U), X (auth: W), Z (auth: Y), BA (auth: a)
Chain Length:46
Number of Molecules:14
Biological Source:Allochromatium tepidum
Polymer Type:polypeptide(L)
Description:Beta subunit of light-harvesting 1 complex
Chain IDs:A (auth: b), C (auth: A), E (auth: C), G (auth: E), I (auth: H), K (auth: J), M (auth: L), O (auth: N), Q (auth: P), S (auth: R), U (auth: T), W (auth: V), Y (auth: X), AA (auth: Z)
Chain Length:46
Number of Molecules:14
Biological Source:Allochromatium tepidum
Primary Citation
Probing the Dual Role of Ca 2+ in the Allochromatium tepidum LH1-RC Complex by Constructing and Analyzing Ca 2+ -Bound and Ca 2+ -Free LH1 Complexes.
Biomolecules 15 ? ? (2025)
PMID: 39858518 DOI: 10.3390/biom15010124

Abstact

The genome of the mildly thermophilic hot spring purple sulfur bacterium, Allochromatium (Alc.) tepidum, contains a multigene pufBA family that encodes a series of α- and β-polypeptides, collectively forming a heterogeneous light-harvesting 1 (LH1) complex. The Alc. tepidum LH1, therefore, offers a unique model for studying an intermediate phenotype between phototrophic thermophilic and mesophilic bacteria, particularly regarding their LH1 Qy transition and moderately enhanced thermal stability. Of the 16 α-polypeptides in the Alc. tepidum LH1, six α1 bind Ca2+ to connect with β1- or β3-polypeptides in specific Ca2+-binding sites. Here, we use the purple bacterium Rhodospirillum rubrum strain H2 as a host to express Ca2+-bound and Ca2+-free Alc. tepidum LH1-only complexes composed of α- and β-polypeptides that either contain or lack the calcium-binding motif WxxDxI; purified preparations of each complex were then used to test how Ca2+ affects their thermostability and spectral features. The cryo-EM structures of both complexes were closed circular rings consisting of 14 αβ-polypeptides. The Qy absorption maximum of Ca2+-bound LH1 (α1/β1 and α1/β3) was at 894 nm, while that of Ca2+-free (α2/β1) was at 888 nm, indicating that Ca2+ imparts a Qy transition of 6 nm. Crucially for the ecological success of Alc. tepidum, Ca2+-bound LH1 complexes were more thermostable than Ca2+-free complexes, indicating that calcium plays at least two major roles in photosynthesis by Alc. tepidum-improving photocomplex stability and modifying its spectrum.

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