ISDA

Entry Detail

PDB ID:

8YO7

EMDB ID:

EMD-39437

Keywords:

ISOMERASE

Title:

structure of phage T6 topoisomerase II central domain bound with DNA and m-AMSA

Biological Source:

Source Organism:

Escherichia phage T4, Enterobacteria phage T6, DNA molecule

Host Organism:

Escherichia coli

PDB Version:

Deposition Date:

2024-03-12

Release Date:

2024-09-25

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.16 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA topoisomerase medium subunit
Chain IDs:A, B
Chain Length:452
Number of Molecules:2
Biological Source:Escherichia phage T4

UniProt ID:P07065 Pfam ID:PF00521

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA topoisomerase (ATP-hydrolyzing)
Chain IDs:C, D
Chain Length:611
Number of Molecules:2
Biological Source:Enterobacteria phage T6

UniProt ID:A0A346FJ89 Pfam ID:PF02518, PF00204

Polymer Type:polydeoxyribonucleotide
Description:DNA (5'-D(P*AP*TP*AP*TP*AP*CP*AP*CP*AP*TP*AP*T)-3')
Chain IDs:E, H (auth: Y)
Chain Length:52
Number of Molecules:2
Biological Source:DNA molecule

Polymer Type:polydeoxyribonucleotide
Description:DNA (5'-D(P*AP*TP*AP*TP*AP*TP*AP*CP*AP*CP*A)-3')
Chain IDs:F, G (auth: X)
Chain Length:52
Number of Molecules:2
Biological Source:DNA molecule

Ligand Molecules

ASW

Primary Citation

structure of phage T6 topoisomerase II central domain bound with DNA and m-AMSA

Chen, Y.T, Xin, Y.H, Xian, R.Q.Show

To be published ? ? ? (?)

Primary Citation of related structures