8YLU image
Deposition Date 2024-03-06
Release Date 2024-09-25
Last Version Date 2024-09-25
Entry Detail
PDB ID:
8YLU
Keywords:
ISOMERASE
Title:
structure of phage T6 topoisomerase II central domain bound with DNA
Biological Source:
Source Organism:
Escherichia phage T4 (Taxon ID: 2681598)
Salmonella phage Chi (Taxon ID: 2927983)
DNA molecule (Taxon ID: 2853804)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
8YLU validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA topoisomerase medium subunit
Gene (Uniprot):52
Chain IDs:A, B
Chain Length:452
Number of Molecules:2
Biological Source:Escherichia phage T4
UniProt ID:P07065 Pfam ID:PF00521
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA topoisomerase (ATP-hydrolyzing)
Gene (Uniprot):EcT6_00003
Chain IDs:C, D
Chain Length:611
Number of Molecules:2
Biological Source:Salmonella phage Chi
UniProt ID:A0A346FJ89 Pfam ID:PF02518, PF00204
Polymer Type:polydeoxyribonucleotide
Molecule:DNA(5'-D(P*TP*GP*TP*GP*TP*GP*TP*AP*TP*AP*TP*AP*TP*AP*CP*AP*CP*AP*TP*AP*TP*AP))
Chain IDs:E
Chain Length:22
Number of Molecules:1
Biological Source:DNA molecule
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*TP*AP*TP*AP*TP*GP*TP*GP*TP*AP*TP*AP*TP*AP*TP*AP*CP*AP*CP*AP*CP*A)-3')
Chain IDs:F
Chain Length:22
Number of Molecules:1
Biological Source:DNA molecule
Ligand Molecules
MG
Primary Citation
structure of phage T6 topoisomerase II central domain bound with DNA
To be published ? ? ? (?)
Primary Citation of related structures
8YLU