8YLB image
Entry Detail
PDB ID:
8YLB
Keywords:
Title:
Cocrystal structures of agonists compound 1 with HsClpP
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2024-03-06
Release Date:
2024-05-15
Method Details:
Experimental Method:
Resolution:
2.15 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:ATP-dependent Clp protease proteolytic subunit, mitochondrial
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L, M, N
Chain Length:220
Number of Molecules:14
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Rational Design of a Novel Class of Human ClpP Agonists through a Ring-Opening Strategy with Enhanced Antileukemia Activity.
J.Med.Chem. 67 6769 6792 (2024)
PMID: 38620134 DOI: 10.1021/acs.jmedchem.4c00338

Abstact

The activation of Homo sapiens Casein lysing protease P (HsClpP) by a chemical or genetic strategy has been proved to be a new potential therapy in acute myeloid leukemia (AML). However, limited efficacy has been achieved with classic agonist imipridone ONC201. Here, a novel class of HsClpP agonists is designed and synthesized using a ring-opening strategy based on the lead compound 1 reported in our previous study. Among these novel scaffold agonists, compound 7k exhibited remarkably enhanced proteolytic activity of HsClpP (EC50 = 0.79 ± 0.03 μM) and antitumor activity in vitro (IC50 = 0.038 ± 0.003 μM). Moreover, the intraperitoneal administration of compound 7k markedly suppressed tumor growth in Mv4-11 xenograft models, achieving a tumor growth inhibition rate of 88%. Concurrently, 7k displayed advantageous pharmacokinetic properties in vivo. This study underscores the promise of compound 7k as a significant HsClpP agonist and an antileukemia drug candidate, warranting further exploration for AML treatment.

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Primary Citation of related structures