8YKG image
Deposition Date 2024-03-05
Release Date 2025-03-12
Last Version Date 2025-03-12
Entry Detail
PDB ID:
8YKG
Keywords:
VIRAL PROTEIN
Title:
Structure of SARS-CoV-2 spike glycoprotein in complex with NT-108 scFv (1-up state)
Biological Source:
Source Organism:
Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Homo sapiens
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.28 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
8YKG validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Gene (Uniprot):S
Mutagens:F817P, A892P, A899P, A942P, K986P, V987P, R682G, R683S, R685G
Chain IDs:A, B, C
Chain Length:1199
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2
UniProt ID:P0DTC2 Pfam ID:PF16451, PF09408, PF19209, PF01601
Polymer Type:polypeptide(L)
Molecule:NT-108 scFv
Chain IDs:D, E (auth: F)
Chain Length:251
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
NAG
Primary Citation
Structural basis for potent neutralization activity of SARS-CoV-2 antibody, NT-108
To Be Published ? ? ? (?)
Primary Citation of related structures
8YKG