8YKD image
Deposition Date 2024-03-04
Release Date 2025-08-13
Last Version Date 2025-10-08
Entry Detail
PDB ID:
8YKD
Title:
Cryo-EM structure of ADGRG2-Gs complex with NTF nanobody
Biological Source:
Source Organism:
Spodoptera (Taxon ID: 7106)
Method Details:
Experimental Method:
Resolution:
2.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Guanine nucleotide-binding protein G(s) subunit alpha
Gene (Uniprot):GNAS
Mutagens:G236A,A259D,S262D,L272D,A366S,I372A,V375I
Chain IDs:A
Chain Length:361
Number of Molecules:1
Biological Source:Spodoptera
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
Gene (Uniprot):GNB1
Chain IDs:B
Chain Length:358
Number of Molecules:1
Biological Source:Spodoptera
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Guanine nucleotide-binding protein subunit gamma
Gene (Uniprot):mRhiFer1_005810
Chain IDs:C (auth: G)
Chain Length:108
Number of Molecules:1
Biological Source:Spodoptera
Polymer Type:polypeptide(L)
Molecule:Nanobody-35
Chain IDs:D (auth: N)
Chain Length:128
Number of Molecules:1
Biological Source:Spodoptera
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Adhesion G-protein coupled receptor G2
Gene (Uniprot):Adgrg2
Chain IDs:E (auth: R)
Chain Length:903
Number of Molecules:1
Biological Source:Spodoptera
Polymer Type:polypeptide(L)
Molecule:ScFv-16
Chain IDs:F (auth: S)
Chain Length:250
Number of Molecules:1
Biological Source:Spodoptera
Ligand Molecules
Primary Citation
Development of an allosteric adhesion GPCR nanobody with therapeutic potential.
Nat.Chem.Biol. 21 1519 1530 (2025)
PMID: 40374856 DOI: 10.1038/s41589-025-01896-2

Abstact

Allosteric modulation of receptor responses to endogenous agonists has therapeutic value, maintaining ligand profiles, reducing side effects and restoring mutant responses. Adhesion G-protein-coupled receptors (aGPCRs), with large N termini, are ideal for allosteric modulator development. We designed a nanobody strategy targeting ADGRG2 N-terminal fragments and got a specific nanobody Nb23-bi, which promoted dehydroepiandrosterone (DHEA)-induced ADGRG2 activation and reversed mutant-induced dysfunctions. By combining structural characterization, crosslinking mass spectrometry, mutational analysis and molecular dynamics simulations, we clarified the allosteric mechanism of how the Nb23-bi modulates conformational changes in the DHEA-binding pocket. Animal studies showed that Nb23-bi promoted the response of DHEA in alleviating testicular inflammation and reversing mutant defects. In summary, we developed an allosteric nanobody of ADGRG2 and gained insights into its functions in reversing disease-associated dysfunctions. Our study may serve as a template for developing allosteric modulators of other aGPCRs for biological and therapeutic purposes.

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Primary Citation of related structures