8YJX image
Entry Detail
PDB ID:
8YJX
Keywords:
Title:
Crystal structure of penicillin-binding protein 2 (PBP2) from Campylobacter jejuni
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2024-03-03
Release Date:
2024-04-17
Method Details:
Experimental Method:
Resolution:
2.95 Å
R-Value Free:
0.27
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Penicillin-binding protein 2
Chain IDs:A, B
Chain Length:568
Number of Molecules:2
Biological Source:Campylobacter jejuni
Ligand Molecules
Primary Citation
Structural and biochemical analysis of penicillin-binding protein 2 from Campylobacter jejuni.
Biochem.Biophys.Res.Commun. 710 149859 149859 (2024)
PMID: 38581948 DOI: 10.1016/j.bbrc.2024.149859

Abstact

Penicillin-binding protein 2 (PBP2) plays a key role in the formation of peptidoglycans in bacterial cell walls by crosslinking glycan chains through transpeptidase activity. PBP2 is also found in Campylobacter jejuni, a pathogenic bacterium that causes food-borne enteritis in humans. To elucidate the essential structural features of C. jejuni PBP2 (cjPBP2) that mediate its biological function, we determined the crystal structure of cjPBP2 and assessed its protein stability under various conditions. cjPBP2 adopts an elongated two-domain structure, consisting of a transpeptidase domain and a pedestal domain, and contains typical active site residues necessary for transpeptidase activity, as observed in other PBP2 proteins. Moreover, cjPBP2 responds to β-lactam antibiotics, including ampicillin, cefaclor, and cefmetazole, suggesting that β-lactam antibiotics inactivate cjPBP2. In contrast to typical PBP2 proteins, cjPBP2 is a rare example of a Zn2+-binding PBP2 protein, as the terminal structure of its transpeptidase domain accommodates a Zn2+ ion via three cysteine residues and one histidine residue. Zn2+ binding helps improve the protein stability of cjPBP2, providing opportunities to develop new C. jejuni-specific antibacterial drugs that counteract the Zn2+-binding ability of cjPBP2.

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