ISDA

Deposition Date 2024-03-01

Release Date 2025-03-05

Last Version Date 2025-03-05

Entry Detail

PDB ID:

8YJB

Keywords:

TRANSCRIPTION

Title:

Cryo-EM structure of the human DSS1-INTAC complex

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Homo sapiens

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

4.10 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:26S proteasome complex subunit DSS1
Gene (Uniprot):SEM1
Chain IDs:A (auth: 0)
Chain Length:70
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P60896 Pfam ID:PF05160

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Integrator complex subunit 1
Gene (Uniprot):INTS1
Chain IDs:I (auth: A)
Chain Length:2190
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q8N201 Pfam ID:PF12432, PF22929, PF22927, PF22928

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Integrator complex subunit 2
Gene (Uniprot):INTS2
Chain IDs:D (auth: B)
Chain Length:1204
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9H0H0 Pfam ID:PF14750

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Integrator complex subunit 4
Gene (Uniprot):INTS4
Chain IDs:E (auth: D)
Chain Length:963
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q96HW7 Pfam ID:PF20168, PF13646

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Integrator complex subunit 5
Gene (Uniprot):INTS5
Chain IDs:J (auth: E)
Chain Length:1019
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q6P9B9 Pfam ID:PF14837, PF14838

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Integrator complex subunit 6
Gene (Uniprot):INTS6
Chain IDs:K (auth: F)
Chain Length:887
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9UL03 Pfam ID:PF13519, PF15300

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Integrator complex subunit 7
Gene (Uniprot):INTS7
Chain IDs:F (auth: G)
Chain Length:962
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9NVH2 Pfam ID:PF22965

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Integrator complex subunit 8
Gene (Uniprot):INTS8
Chain IDs:L (auth: H)
Chain Length:995
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q75QN2

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Integrator complex subunit 9
Gene (Uniprot):INTS9
Chain IDs:B (auth: I)
Chain Length:658
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9NV88 Pfam ID:PF16661, PF10996, PF21382

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Integrator complex subunit 11
Gene (Uniprot):INTS11
Chain IDs:C (auth: K)
Chain Length:600
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q5TA45 Pfam ID:PF16661, PF10996, PF07521, PF21386

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform
Gene (Uniprot):PPP2R1A
Chain IDs:G (auth: P)
Chain Length:589
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P30153 Pfam ID:PF02985

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform
Gene (Uniprot):PPP2CA
Chain IDs:H (auth: Q)
Chain Length:309
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P67775 Pfam ID:PF00149 EC:3.1.3.16

Ligand Molecules

Primary Citation

Stabilization of Integrator/INTAC by the small but versatile DSS1 protein.

Xu, C, Zhou, Q, Zheng, H, Song, A, Zhao, W, Xiong, Y, Huang, Z, Xu, Y, Cheng, J, Chen, F.X.Show

To Be Published ? ? ? (?)

Primary Citation of related structures