8YIX image
Entry Detail
PDB ID:
8YIX
EMDB ID:
Title:
Cryo-EM structure of human proteasome assembly intermediate half-proteasome
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2024-02-29
Release Date:
2025-01-15
Method Details:
Experimental Method:
Resolution:
2.91 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Proteasome subunit alpha type-2
Chain IDs:A
Chain Length:234
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Proteasome subunit alpha type-4
Chain IDs:B
Chain Length:261
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Proteasome subunit alpha type-7
Chain IDs:C
Chain Length:248
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Proteasome subunit alpha type-5
Chain IDs:D
Chain Length:241
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Proteasome subunit alpha type-1
Chain IDs:E
Chain Length:263
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Proteasome subunit alpha type-3
Chain IDs:F
Chain Length:288
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Proteasome subunit alpha type-6
Chain IDs:G
Chain Length:264
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Proteasome subunit beta type-7
Chain IDs:H
Chain Length:277
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Proteasome subunit beta type-3
Chain IDs:I
Chain Length:205
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Proteasome subunit beta type-2
Chain IDs:J
Chain Length:201
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Proteasome subunit beta type-5
Chain IDs:K
Chain Length:263
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Proteasome subunit beta type-1
Chain IDs:L
Chain Length:241
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Proteasome subunit beta type-4
Chain IDs:M
Chain Length:253
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Proteasome subunit beta type-6
Chain IDs:N
Chain Length:239
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Proteasome assembly chaperone 1
Chain IDs:O (auth: f)
Chain Length:288
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Proteasome assembly chaperone 2
Chain IDs:P (auth: g)
Chain Length:264
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Proteasome maturation protein
Chain IDs:Q (auth: h)
Chain Length:277
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Molecular basis for the stepwise and faithful maturation of the 20 S proteasome.
Sci Adv 11 eadr7943 eadr7943 (2025)
PMID: 39792683 DOI: 10.1126/sciadv.adr7943

Abstact

The proteasome degrades most superfluous and damaged proteins, and its decline is associated with many diseases. As the proteolytic unit, the 20S proteasome is assembled from 28 subunits assisted by chaperones PAC1/2/3/4 and POMP; then, it undergoes the maturation process, in which the proteolytic sites are activated and the assembly chaperones are cleared. However, mechanisms governing the maturation remain elusive. Here, we captured endogenous maturation intermediates of human 20S proteasome, which are low abundance and highly dynamic, and determined their structures by cryo-electron microscopy. Through structure-based functional studies, we identified the key switches that remodel and activate the proteolytic sites. Our results also revealed that the POMP degradation is tightly controlled by a dual-checking mechanism, while the α5 subunit senses POMP degradation to induce PAC1/2 release, achieving the full maturation. These findings elucidate mechanisms directing and safeguarding the proteasome maturation and set basis for building proteasomes to counteract the decline of protein degradation in aging and disease.

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Primary Citation of related structures