8YHZ image
Deposition Date 2024-02-28
Release Date 2024-10-23
Last Version Date 2024-12-04
Entry Detail
PDB ID:
8YHZ
Title:
The co-crystal structure of the Fab fragment of Ab-1080 with NaV1.7 VSDII peptide
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.62 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Heavy chain of 1080 Fab
Chain IDs:B (auth: H)
Chain Length:214
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:Light chain of 1080 Fab
Chain IDs:A (auth: L)
Chain Length:218
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Sodium channel protein type 9 subunit alpha
Gene (Uniprot):SCN9A
Chain IDs:C (auth: P)
Chain Length:11
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Intra-channel bi-epitopic crosslinking unleashes ultrapotent antibodies targeting Na V 1.7 for pain alleviation.
Cell Rep Med 5 101800 101800 (2024)
PMID: 39461335 DOI: 10.1016/j.xcrm.2024.101800

Abstact

Crucial for cell activities, ion channels are key drug discovery targets. Although small-molecule and peptide modulators dominate ion channel drug discovery, antibodies are emerging as an alternative modality. However, challenges persist in generating potent antibodies, especially for channels with limited extracellular epitopes. We herein present a bi-epitopic crosslinking strategy to overcome these challenges, focusing on NaV1.7, a potential analgesic target. Aiming to crosslink two non-overlapping epitopes on voltage-sensing domains II and IV, we construct bispecific antibodies and ligand-antibody conjugates. Enhanced affinity and potency are observed in comparison to the monospecific controls. Among them, a ligand-antibody conjugate (1080-PEG7-ACDTB) displays a two-orders-of-magnitude improvement in potency (IC50 of 0.06 ± 0.01 nM) and over 1,000-fold selectivity for NaV1.7. Additionally, this conjugate demonstrates robust analgesic effects in mouse pain models. Our study introduces an approach to developing effective antibodies against NaV1.7, thereby initiating a promising direction for the advancement of pain therapeutics.

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