8YGD image
Entry Detail
PDB ID:
8YGD
EMDB ID:
Keywords:
Title:
Rhodobacter blasticus RC-LH1 dimer
Biological Source:
PDB Version:
Deposition Date:
2024-02-26
Release Date:
2025-03-05
Method Details:
Experimental Method:
Resolution:
2.84 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Antenna pigment protein beta chain
Chain IDs:A (auth: 0), C (auth: 2), F (auth: 8), I (auth: B), J (auth: C), L (auth: E), N (auth: G), Q (auth: J), U (auth: N), W (auth: P), Y (auth: R), AA (auth: T), CA (auth: V), FA (auth: Z), HA (auth: b)
Chain Length:49
Number of Molecules:15
Biological Source:Fuscovulum blasticum DSM 2131
Polymer Type:polypeptide(L)
Description:Antenna pigment protein alpha chain
Chain IDs:B (auth: 1), D (auth: 3), E (auth: 7), G (auth: 9), H (auth: A), K (auth: D), M (auth: F), P (auth: I), R (auth: K), V (auth: O), X (auth: Q), Z (auth: S), BA (auth: U), DA (auth: W), GA (auth: a)
Chain Length:62
Number of Molecules:15
Biological Source:Fuscovulum blasticum DSM 2131
Polymer Type:polypeptide(L)
Description:Photosynthetic reaction center subunit H
Chain IDs:O (auth: H)
Chain Length:256
Number of Molecules:1
Biological Source:Fuscovulum blasticum DSM 2131
Polymer Type:polypeptide(L)
Description:Reaction center protein L chain
Chain IDs:S (auth: L)
Chain Length:282
Number of Molecules:1
Biological Source:Fuscovulum blasticum DSM 2131
Polymer Type:polypeptide(L)
Description:Reaction center protein M chain
Chain IDs:T (auth: M)
Chain Length:307
Number of Molecules:1
Biological Source:Fuscovulum blasticum DSM 2131
Polymer Type:polypeptide(L)
Description:1-deoxy-D-xylulose-5-phosphate synthase
Chain IDs:EA (auth: X)
Chain Length:75
Number of Molecules:1
Biological Source:Fuscovulum blasticum DSM 2131
Primary Citation
Architectures of photosynthetic RC-LH1 supercomplexes from Rhodobacter blasticus.
Sci Adv 10 eadp6678 eadp6678 (2024)
PMID: 39383221 DOI: 10.1126/sciadv.adp6678

Abstact

The reaction center-light-harvesting complex 1 (RC-LH1) plays an essential role in the primary reactions of bacterial photosynthesis. Here, we present high-resolution structures of native monomeric and dimeric RC-LH1 supercomplexes from Rhodobacter (Rba.) blasticus using cryo-electron microscopy. The RC-LH1 monomer is composed of an RC encircled by an open LH1 ring comprising 15 αβ heterodimers and a PufX transmembrane polypeptide. In the RC-LH1 dimer, two crossing PufX polypeptides mediate dimerization. Unlike Rhodabacter sphaeroides counterpart, Rba. blasticus RC-LH1 dimer has a less bent conformation, lacks the PufY subunit near the LH1 opening, and includes two extra LH1 αβ subunits, forming a more enclosed S-shaped LH1 ring. Spectroscopic assays reveal that these unique structural features are accompanied by changes in the kinetics of quinone/quinol trafficking between RC-LH1 and cytochrome bc1. Our findings reveal the assembly principles and structural variability of photosynthetic RC-LH1 supercomplexes, highlighting diverse strategies used by phototrophic bacteria to optimize light-harvesting and electron transfer in competitive environments.

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