8YDM image
Deposition Date 2024-02-20
Release Date 2025-02-19
Last Version Date 2025-05-07
Entry Detail
PDB ID:
8YDM
Keywords:
Title:
Cryo-EM structure of CaRC-LH complex from Chloroflexus aurantiacus
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.05 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Light-harvesting protein B-808/866 alpha chain
Gene (Uniprot):puf2A
Chain IDs:A, D, F, H, J, O, Q
Chain Length:57
Number of Molecules:7
Biological Source:Chloroflexus aurantiacus J-10-fl
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Light-harvesting protein B-808/866 beta chain
Gene (Uniprot):puf2B
Chain IDs:B, E, G, I, K, P, R
Chain Length:53
Number of Molecules:7
Biological Source:Chloroflexus aurantiacus J-10-fl
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome c-554
Gene (Uniprot):puf2C
Chain IDs:C
Chain Length:414
Number of Molecules:1
Biological Source:Chloroflexus aurantiacus J-10-fl
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Reaction center protein L chain
Gene (Uniprot):pufL
Chain IDs:L
Chain Length:311
Number of Molecules:1
Biological Source:Chloroflexus aurantiacus J-10-fl
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Reaction center protein M chain
Gene (Uniprot):pufM
Chain IDs:M
Chain Length:307
Number of Molecules:1
Biological Source:Chloroflexus aurantiacus J-10-fl
Polymer Type:polypeptide(L)
Molecule:hypothetical protein chain N
Chain IDs:N
Chain Length:64
Number of Molecules:1
Biological Source:Chloroflexus aurantiacus J-10-fl
Primary Citation
Cryo-EM structure of a minimal reaction center-light-harvesting complex from the phototrophic bacterium Chloroflexus aurantiacus.
J Integr Plant Biol 67 967 978 (2025)
PMID: 39912559 DOI: 10.1111/jipb.13853

Abstact

Photosynthetic organisms have developed various light-harvesting antenna systems to capture light and transfer energy to reaction centers (RCs). Simultaneous utilization of the integral membrane light-harvesting antenna (LH complex) and the extrinsic antenna (chlorosomes) makes the phototrophic bacterium Chloroflexus (Cfx.) aurantiacus an ideal model for studying filamentous anoxygenic phototrophs (FAPs). Here, we determined the structure of a minimal RC-LH photocomplex from Cfx. aurantiacus J-10-fl (CaRC-LH) at 3.05-Å resolution. The CaRC-LH binds only to seven LH subunits, which form a crescent-shaped antenna surrounding the movable menaquinone-10 (QB) binding site of CaRC. In this complex with minimal LH units, an extra antenna is required to ensure sufficient light-gathering, providing a clear explanation for the presence of chlorosomes in Cfx. aurantiacus. More importantly, the semicircle of the antenna represents a novel RC-LH assembly pattern. Our structure provides a basis for understanding the existence of chlorosomes in Cfx. aurantiacus and the possible assembly pattern of RC-LH.

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Primary Citation of related structures
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