ISDA

Entry Detail

PDB ID:

8YD1

EMDB ID:

EMD-39162

Keywords:

HYDROLASE

Title:

CryoEM structure of M. tuberculosis ClpC1P1P2 complex bound to bortezomib, conformation 1

Biological Source:

Source Organism:

Mycobacterium tuberculosis H37Rv, Bos grunniens

Host Organism:

Escherichia coli BL21(DE3)

PDB Version:

Deposition Date:

2024-02-19

Release Date:

2025-03-19

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.81 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Description:ATP-dependent Clp protease ATP-binding subunit ClpC1
Mutations:E288A, F444S, E626A
Chain IDs:A, B, C, D, E, F
Chain Length:24
Number of Molecules:6
Biological Source:Mycobacterium tuberculosis H37Rv

UniProt ID:P9WPC9 Pfam ID:PF00004, PF17871, PF07724, PF10431

Protein Blast

Polymer Type:polypeptide(L)
Description:ATP-dependent Clp protease proteolytic subunit 2
Chain IDs:G, H, I, J, K, L, M
Chain Length:181
Number of Molecules:7
Biological Source:Mycobacterium tuberculosis H37Rv

UniProt ID:P9WPC3 Pfam ID:PF00574

Protein Blast

Polymer Type:polypeptide(L)
Description:ATP-dependent Clp protease proteolytic subunit 1
Chain IDs:N, O, P, Q, R, S, T
Chain Length:178
Number of Molecules:7
Biological Source:Mycobacterium tuberculosis H37Rv

UniProt ID:P9WPC5 Pfam ID:PF00574

Protein Blast

Polymer Type:polypeptide(L)
Description:Beta-casein
Chain IDs:U (auth: a)
Chain Length:24
Number of Molecules:1
Biological Source:Bos grunniens

UniProt ID:P02666

Ligand Molecules