8YCM image
Deposition Date 2024-02-18
Release Date 2024-03-06
Last Version Date 2024-07-03
Entry Detail
PDB ID:
8YCM
Title:
Monomeric Human STK19
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.32 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Isoform 4 of Inactive serine/threonine-protein kinase 19
Gene (Uniprot):STK19
Chain IDs:A, B
Chain Length:229
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Mutations found in cancer patients compromise DNA binding of the winged helix protein STK19.
Sci Rep 14 14098 14098 (2024)
PMID: 38890355 DOI: 10.1038/s41598-024-64840-9

Abstact

Serine/threonine protein kinase 19 (STK19) has been reported to phosphorylate and activate oncogenic NRAS to promote melanomagenesis. However, concerns have been raised about whether STK19 is a kinase. STK19 has also been identified as a putative factor involved in the transcription-coupled nucleotide excision repair (TC-NER) pathway. In this study, we determined the 1.32 Å crystal structure of human STK19. The structure reveals that STK19 is a winged helix (WH) protein consisting of three tandem WH domains. STK19 binds more strongly to double-stranded DNA and RNA (dsDNA/dsRNA) than to ssDNA. A positively charged patch centered on helix WH3-H1 contributes to dsDNA binding, which is unusual because the WH domain typically uses helix H3 as the recognition helix. Importantly, mutations of the conserved residues in the basic patch, K186N, R200W, and R215W, are found in cancer patients, and these mutations compromise STK19 DNA binding. Other mutations have been predicted to produce a similar effect, including two mutations that disrupt the nuclear localization signal (NLS) motif. These mutations may indirectly impact the DNA binding capacity of STK19 by interfering with its nuclear localization.

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Primary Citation of related structures