8YAJ image
Entry Detail
PDB ID:
8YAJ
EMDB ID:
Title:
ATAT-2 bound MEC-12/MEC-7 microtubule without acetyl-CoA
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-02-09
Release Date:
2024-11-06
Method Details:
Experimental Method:
Resolution:
3.20 Å
Aggregation State:
HELICAL ARRAY
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Tubulin alpha-3 chain
Chain IDs:A (auth: B), D (auth: E)
Chain Length:450
Number of Molecules:2
Biological Source:Caenorhabditis elegans
Polymer Type:polypeptide(L)
Description:Alpha-tubulin N-acetyltransferase 2
Chain IDs:B (auth: C), F (auth: I)
Chain Length:263
Number of Molecules:2
Biological Source:Caenorhabditis elegans
Polymer Type:polypeptide(L)
Description:Tubulin beta-1 chain
Chain IDs:C (auth: D), E (auth: F)
Chain Length:441
Number of Molecules:2
Biological Source:Caenorhabditis elegans
Primary Citation
Tubulin acetyltransferases access and modify the microtubule luminal K40 residue through anchors in taxane-binding pockets.
Nat.Struct.Mol.Biol. 32 358 368 (2025)
PMID: 39496813 DOI: 10.1038/s41594-024-01406-3

Abstact

Acetylation at α-tubulin K40 is the sole post-translational modification preferred to occur inside the lumen of hollow cylindrical microtubules. However, how tubulin acetyltransferases access the luminal K40 in micrometer-long microtubules remains unknown. Here, we use cryo-electron microscopy and single-molecule reconstitution assays to reveal the enzymatic mechanism for tubulin acetyltransferases to modify K40 in the lumen. One tubulin acetyltransferase spans across the luminal lattice, with the catalytic core docking onto two α-tubulins and the enzyme's C-terminal domain occupying the taxane-binding pockets of two β-tubulins. The luminal accessibility and enzyme processivity of tubulin acetyltransferases are inhibited by paclitaxel, a microtubule-stabilizing chemotherapeutic agent. Characterizations using recombinant tubulins mimicking preacetylated and postacetylated K40 show the crosstalk between microtubule acetylation states and the cofactor acetyl-CoA in enzyme turnover. Our findings provide crucial insights into the conserved multivalent interactions involving α- and β-tubulins to acetylate the confined microtubule lumen.

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