8YAH image
Deposition Date 2024-02-09
Release Date 2025-03-26
Last Version Date 2025-08-27
Entry Detail
PDB ID:
8YAH
Title:
full length AP5 complex bound to SPG11-SPG15
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:AP-5 complex subunit zeta-1
Gene (Uniprot):Ap5z1
Chain IDs:A
Chain Length:808
Number of Molecules:1
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:AP-5 complex subunit beta-1
Gene (Uniprot):AP5B1
Chain IDs:B
Chain Length:878
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:AP-5 complex subunit sigma-1
Gene (Uniprot):AP5S1
Chain IDs:C
Chain Length:200
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spatacsin
Gene (Uniprot):SPG11
Chain IDs:E (auth: D)
Chain Length:2443
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:AP-5 complex subunit mu-1
Gene (Uniprot):Ap5m1
Chain IDs:D (auth: E)
Chain Length:490
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Structural basis for membrane remodeling by the AP5-SPG11-SPG15 complex.
Nat.Struct.Mol.Biol. 32 1334 1346 (2025)
PMID: 40175557 DOI: 10.1038/s41594-025-01500-0

Abstact

The human spastizin (spastic paraplegia 15, SPG15) and spatacsin (spastic paraplegia 11, SPG11) complex is involved in the formation of lysosomes, and mutations in these two proteins are linked with hereditary autosomal-recessive spastic paraplegia. SPG11-SPG15 can cooperate with the fifth adaptor protein complex (AP5) involved in membrane sorting of late endosomes. We employed cryogenic-electron microscopy and in silico predictions to investigate the structural assemblies of the SPG11-SPG15 and AP5-SPG11-SPG15 complexes. The W-shaped SPG11-SPG15 intertwined in a head-to-head fashion, and the N-terminal region of SPG11 is required for AP5 complex interaction and assembly. The AP5 complex is in a super-open conformation. Our findings reveal that the AP5-SPG11-SPG15 complex can bind PI3P molecules, sense membrane curvature and drive membrane remodeling in vitro. These studies provide insights into the structure and function of the spastic paraplegia AP5-SPG11-SPG15 complex, which is essential for the initiation of autolysosome tubulation.

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Primary Citation of related structures