8Y9J image
Deposition Date 2024-02-06
Release Date 2025-01-29
Last Version Date 2025-07-02
Entry Detail
PDB ID:
8Y9J
Title:
Structure of the Ebola virus nucleocapsid subunit
Biological Source:
Source Organism:
Zaire ebolavirus (Taxon ID: 186538)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Nucleoprotein
Gene (Uniprot):NP
Chain IDs:A, B
Chain Length:739
Number of Molecules:2
Biological Source:Zaire ebolavirus
Polymer Type:polypeptide(L)
Molecule:Membrane-associated protein VP24
Gene (Uniprot):VP24
Chain IDs:C, D
Chain Length:251
Number of Molecules:2
Biological Source:Zaire ebolavirus
Polymer Type:polyribonucleotide
Molecule:RNA (12-MER)
Chain IDs:E (auth: K)
Chain Length:12
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural basis for Ebola virus nucleocapsid assembly and function regulated by VP24.
Nat Commun 16 2171 2171 (2025)
PMID: 40064872 DOI: 10.1038/s41467-025-57236-4

Abstact

The Ebola virus, a member of the Filoviridae family, causes severe hemorrhagic fever in humans. Filamentous virions contain a helical nucleocapsid responsible for genome transcription, replication, and packaging into progeny virions. The nucleocapsid consists of a helical nucleoprotein (NP)-viral genomic RNA complex forming the core structure, to which VP24 and VP35 bind externally. Two NPs, each paired with a VP24 molecule, constitute a repeating unit. However, the detailed nucleocapsid structure remains unclear. Here, we determine the nucleocapsid-like structure within virus-like particles at 4.6 Å resolution using single-particle cryo-electron microscopy. Mutational analysis identifies specific interactions between the two NPs and two VP24s and demonstrates that each of the two VP24s in different orientations distinctively regulates nucleocapsid assembly, viral RNA synthesis, intracellular transport of the nucleocapsid, and infectious virion production. Our findings highlight the sophisticated mechanisms underlying the assembly and functional regulation of the nucleocapsid and provide insights into antiviral development.

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Primary Citation of related structures