8Y98 image
Deposition Date 2024-02-06
Release Date 2024-12-18
Last Version Date 2025-01-22
Entry Detail
PDB ID:
8Y98
Keywords:
Title:
Crystal structure of a heterooligomeric aminotransferase from Serratia sp. ATCC 39006, PPE-bound form
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.31 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:DegT/DnrJ/EryC1/StrS family aminotransferase
Gene (Uniprot):CWC46_09295, Ser39006_009300
Chain IDs:A, B
Chain Length:443
Number of Molecules:2
Biological Source:Serratia sp. ATCC 39006
Polymer Type:polypeptide(L)
Molecule:DegT/DnrJ/EryC1/StrS aminotransferase
Gene (Uniprot):CWC46_09290, Ser39006_009295
Chain IDs:C, D
Chain Length:218
Number of Molecules:2
Biological Source:Serratia sp. ATCC 39006
Ligand Molecules
Primary Citation
Crystal structure of a novel heterooligomeric aminotransferase from Serratia sp. ATCC 39006 provides insights into function.
Febs Lett. 599 74 88 (2025)
PMID: 39618122 DOI: 10.1002/1873-3468.15068

Abstact

Serratia sp. ATCC 39006 has two tandemly positioned genes, ser4 and ser5, both annotated as sugar aminotransferases, in a putative secondary metabolite biosynthetic gene cluster. Ser5 possesses a complete fold-type I aminotransferase fold, while Ser4 lacks the N- and C-terminal regions and a catalytically important lysine residue of fold-type I aminotransferase. We herein revealed that Ser4 and Ser5 formed a heterotetrameric complex (SerTA) with aminotransferase activity and determined the crystal structures. MD simulations and activity assays with SerTA variants indicated that residues from helix α-8* of inactive Ser4 are important for activity, confirming the importance of heterocomplex formation for activity. Furthermore, the structures suggest that SerTA recognizes a substrate loaded on the carrier protein.

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Primary Citation of related structures