ISDA

Deposition Date 2024-02-02

Release Date 2024-06-19

Last Version Date 2025-01-01

Entry Detail

PDB ID:

8Y6D

Keywords:

VIRAL PROTEIN

Title:

Norovirus GII.10 P domain and 2'-FL (tablet)

Biological Source:

Source Organism:

Norovirus (Taxon ID: 142786)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.41 Å

R-Value Free:

0.19

R-Value Work:

0.17

R-Value Observed:

0.17

Space Group:

P 1 21 1

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:GII.10 norovirus P domain in complex with 2'-FL (tablet)
Chain IDs:A, B
Chain Length:315
Number of Molecules:2
Biological Source:Norovirus

UniProt ID:Q5F4T5 Pfam ID:PF08435

Ligand Molecules

EDO

NO3

PEG

Primary Citation

Human milk oligosaccharide 2'-fucosyllactose guards norovirus histo-blood group antigen co-factor binding site.

Rudd, P.A, Kher, G, Tame, J.R.H, Irie, H, Haselhorst, T, von Itzstein, M, Pancera, M, Hansman, G.S.Show

J.Virol. 98 e0086524 e0086524 (2024)

PMID: 38953656 DOI: 10.1128/jvi.00865-24

Primary Citation of related structures