ISDA

Deposition Date 2024-02-01

Release Date 2024-06-19

Last Version Date 2025-01-01

Entry Detail

PDB ID:

8Y5V

Keywords:

VIRAL PROTEIN

Title:

GII.4 Sydney PD and 2'-FL

Biological Source:

Source Organism:

Norovirus (Taxon ID: 142786)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.54 Å

R-Value Free:

0.18

R-Value Work:

0.15

R-Value Observed:

0.15

Space Group:

C 1 2 1

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:GII.4 Sydney PD in complex with 2'-FL (powder)
Chain IDs:A
Chain Length:309
Number of Molecules:1
Biological Source:Norovirus

UniProt ID:K4LM89 Pfam ID:PF08435

Ligand Molecules

EDO

Primary Citation

Human milk oligosaccharide 2'-fucosyllactose guards norovirus histo-blood group antigen co-factor binding site.

Rudd, P.A, Kher, G, Tame, J.R.H, Irie, H, Haselhorst, T, von Itzstein, M, Pancera, M, Hansman, G.S.Show

J.Virol. 98 e0086524 e0086524 (2024)

PMID: 38953656 DOI: 10.1128/jvi.00865-24

Primary Citation of related structures