8Y4U image
Deposition Date 2024-01-30
Release Date 2024-02-28
Last Version Date 2024-04-03
Entry Detail
PDB ID:
8Y4U
Keywords:
Title:
Crystal structure of a His1 from oryza sativa
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
I 2 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Fe(II)/2-oxoglutarate-dependent oxygenase
Gene (Uniprot):HIS1
Chain IDs:A
Chain Length:351
Number of Molecules:1
Biological Source:Oryza sativa subsp. japonica
Ligand Molecules
Primary Citation
Crystal structure of HPPD inhibitor sensitive protein from Oryza sativa.
Biochem.Biophys.Res.Commun. 704 149672 149672 (2024)
PMID: 38401306 DOI: 10.1016/j.bbrc.2024.149672

Abstact

4-hydroxyphenylpyruvate dioxygenase (HPPD) Inhibitor Sensitive 1 (HIS1) is an endogenous gene of rice, conferring broad-spectrum resistance to β-triketone herbicides. Similar genes, known as HIS1-like genes (HSLs), exhibit analogous functions and can complement the herbicide-resistant characteristics endowed by HIS1. The identification of HIS1 and HSLs represents a valuable asset, as the intentional pairing of herbicides with resistance genes emerges as an effective strategy for crop breeding. Encoded by HIS1 is a Fe(II)/2-oxoglutarate-dependent oxygenase responsible for detoxifying β-triketone herbicides through hydroxylation. However, the precise structure supporting this function remains unclear. This work, which determined the crystal structure of HIS1, reveals a conserved core motif of Fe(II)/2-oxoglutarate-dependent oxygenase and pinpoints the crucial residue dictating substrate preference between HIS1 and HSL.

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Disease

Primary Citation of related structures