8Y4C image
Deposition Date 2024-01-30
Release Date 2024-09-04
Last Version Date 2025-07-16
Entry Detail
PDB ID:
8Y4C
Keywords:
VIRAL PROTEIN/IMMUNE SYSTEM
Title:
BA.2.86 S-trimer in complex with Nab XGv280
Biological Source:
Source Organism:
Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Homo sapiens
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.75 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
8Y4C validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Gene (Uniprot):S
Chain IDs:A, D (auth: B), G (auth: C)
Chain Length:1204
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2
UniProt ID:P0DTC2 Pfam ID:PF01601, PF19209, PF09408, PF16451
Polymer Type:polypeptide(L)
Molecule:XGv280 Heavy chain
Chain IDs:B (auth: H), E (auth: D), H (auth: E)
Chain Length:126
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:XGv280 Light chain
Chain IDs:C (auth: L), F, I (auth: G)
Chain Length:111
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
NAG
Primary Citation
Enhancing RBD exposure and S1 shedding by an extremely conserved SARS-CoV-2 NTD epitope.
Signal Transduct Target Ther 9 217 217 (2024)
PMID: 39191733 DOI: 10.1038/s41392-024-01940-y
Primary Citation of related structures
8Y4C
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