8Y4A image
Deposition Date 2024-01-30
Release Date 2024-09-11
Last Version Date 2025-07-16
Entry Detail
PDB ID:
8Y4A
Keywords:
VIRAL PROTEIN/IMMUNE SYSTEM
Title:
BA.2.86 S-trimer in complex with Nab XG2v046
Biological Source:
Source Organism:
Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Homo sapiens
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
8Y4A validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Gene (Uniprot):S
Chain IDs:A (auth: B), B (auth: C), C (auth: A)
Chain Length:1204
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2
UniProt ID:P0DTC2 Pfam ID:PF16451, PF09408, PF19209, PF01601
Polymer Type:polypeptide(L)
Molecule:XG2v046 Heavy chain
Chain IDs:D (auth: H), F (auth: D)
Chain Length:122
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:XG2v046 Light chain
Chain IDs:E (auth: L), G (auth: E)
Chain Length:108
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
NAG
Primary Citation
Enhancing RBD exposure and S1 shedding by an extremely conserved SARS-CoV-2 NTD epitope.
Signal Transduct Target Ther 9 217 217 (2024)
PMID: 39191733 DOI: 10.1038/s41392-024-01940-y
Primary Citation of related structures
8Y4A