8Y3U image
Deposition Date 2024-01-29
Release Date 2024-08-07
Last Version Date 2025-02-19
Entry Detail
PDB ID:
8Y3U
Title:
Ebola virus glycoprotein in complex with a broadly neutralizing antibody 2G1
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Ebola virus (Taxon ID: 1570291)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.98 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:2G1 VH
Chain IDs:A, E, I
Chain Length:124
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:2G1 VL
Chain IDs:B, F, J
Chain Length:105
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Virion spike glycoprotein
Gene (Uniprot):GP
Chain IDs:C, G, K
Chain Length:97
Number of Molecules:3
Biological Source:Ebola virus
Polymer Type:polypeptide(L)
Molecule:SGP
Gene (Uniprot):GP
Chain IDs:D, H, L
Chain Length:157
Number of Molecules:3
Biological Source:Ebola virus
Ligand Molecules
Primary Citation
A pan-orthoebolavirus neutralizing antibody encoded by mRNA effectively prevents virus infection.
Emerg Microbes Infect 13 2432366 2432366 (2024)
PMID: 39560055 DOI: 10.1080/22221751.2024.2432366

Abstact

Orthoebolavirus is a genus of hazardous pathogens that has caused over 30 outbreaks. However, currently approved therapies are limited in scope, as they are only effective against the Ebola virus and lack cross-protection against other orthoebolaviruses. Here, we demonstrate that a previously isolated human-derived antibody, 2G1, can recognize the glycoprotein (GP) of every orthoebolavirus species. The cryo-electron microscopy structure of 2G1 Fab in complex with the GPΔMucin trimer reveals that 2G1 binds a quaternary pocket formed by three subunits from two GP protomers. 2G1 recognizes highly conserved epitopes among filoviruses and achieves neutralization by blocking GP proteolysis. We designed an efficient mRNA module capable of producing test antibodies at expression levels exceeding 1500 ng/mL in vitro. The lipid nanoparticle (LNP)-encapsulated mRNA-2G1 exhibited potent neutralizing activities against the HIV-pseudotyped Ebola and Sudan viruses that were 19.8 and 12.5 times that of IgG format, respectively. In mice, the antibodies encoded by the mRNA-2G1-LNP peaked within 24 h, effectively blocking the invasion of pseudoviruses with no apparent liver toxicity. This study suggests that the 2G1 antibody and its mRNA formulation represent promising candidate interventions for orthoebolavirus disease, and it provides an efficient mRNA framework applicable to antibody-based therapies.

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Primary Citation of related structures