8Y1U image
Entry Detail
PDB ID:
8Y1U
Title:
Crystal structure of ASB7-Elongin B/C bound to the LZTS1-degron
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-01-25
Release Date:
2024-12-04
Method Details:
Experimental Method:
Resolution:
2.41 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Ankyrin repeat and SOCS box protein 7
Chain IDs:A
Chain Length:309
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Peptide from Leucine zipper putative tumor suppressor 1
Chain IDs:B
Chain Length:23
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Elongin-B
Chain IDs:C
Chain Length:104
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Elongin-C
Chain IDs:D
Chain Length:96
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Molecular insights into degron recognition by CRL5 ASB7 ubiquitin ligase.
Nat Commun 15 6177 6177 (2024)
PMID: 39039081 DOI: 10.1038/s41467-024-50556-x

Abstact

The ankyrin (ANK) SOCS box (ASB) family, encompassing ASB1-18, is the largest group of substrate receptors of cullin 5 Ring E3 ubiquitin ligase. Nonetheless, the mechanism of substrate recognition by ASB family proteins has remained largely elusive. Here we present the crystal structure of ASB7-Elongin B-Elongin C ternary complex bound to a conserved helical degron. ASB7 employs its ANK3-6 to form an extended groove, effectively interacting with the internal α-helix-degron through a network of side-chain-mediated electrostatic and hydrophobic interactions. Our structural findings, combined with biochemical and cellular analyses, identify the key residues of the degron motif and ASB7 required for their recognition. This will facilitate the identification of additional physiological substrates of ASB7 by providing a defined degron motif for screening. Furthermore, the structural insights provide a basis for the rational design of compounds that can specifically target ASB7 by disrupting its interaction with its cognate degron.

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