8XYN image
Deposition Date 2024-01-20
Release Date 2024-07-24
Last Version Date 2024-07-24
Entry Detail
PDB ID:
8XYN
Keywords:
Title:
Structure of the engineered retro-aldolase RA95.5-8
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
I 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:retro-aldolase RA95.5-8
Chain IDs:A, B
Chain Length:256
Number of Molecules:2
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
An Artificial Enzyme for Asymmetric Nitrocyclopropanation of alpha , beta-Unsaturated Aldehydes-Design and Evolution.
Angew.Chem.Int.Ed.Engl. 63 e202401635 e202401635 (2024)
PMID: 38597773 DOI: 10.1002/anie.202401635

Abstact

The introduction of an abiological catalytic group into the binding pocket of a protein host allows for the expansion of enzyme chemistries. Here, we report the generation of an artificial enzyme by genetic encoding of a non-canonical amino acid that contains a secondary amine side chain. The non-canonical amino acid and the binding pocket function synergistically to catalyze the asymmetric nitrocyclopropanation of α,β-unsaturated aldehydes by the iminium activation mechanism. The designer enzyme was evolved to an optimal variant that catalyzes the reaction at high conversions with high diastereo- and enantioselectivity. This work demonstrates the application of genetic code expansion in enzyme design and expands the scope of enzyme-catalyzed abiological reactions.

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Disease

Primary Citation of related structures