8XYF image
Entry Detail
PDB ID:
8XYF
Title:
Crystal structure of Holo-PlyGRCS, a bacteriophage Endolysin in complex with Cold shock protein C
Biological Source:
PDB Version:
Deposition Date:
2024-01-19
Release Date:
2025-01-01
Method Details:
Experimental Method:
Resolution:
1.67 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Endolysin
Chain IDs:A
Chain Length:256
Number of Molecules:1
Biological Source:Staphylococcus phage GRCS
Polymer Type:polypeptide(L)
Description:Cold shock-like protein CspC
Chain IDs:B
Chain Length:69
Number of Molecules:1
Biological Source:Escherichia coli K-12
Ligand Molecules
Primary Citation
Structural Basis for the Essential Role of Ca 2+ in the Lytic Activity of Staphylococcus aureus PlyGRCS Endolysin Targeting Methicillin-Resistant Staphylococcus aureus.
Proteins 93 920 933 (2025)
PMID: 39660753 DOI: 10.1002/prot.26777

Abstact

Staphylococcus aureus causes a wide range of infections, from mild skin conditions to severe, life-threatening diseases. Bacteriophage endolysins exhibit a selective capacity to degrade the peptidoglycan layer of Gram-positive bacteria, making promising biotherapeutic agents against antibiotic-resistant infections. PlyGRCS, a specific endolysin derived from S. aureus, comprises a catalytic CHAP domain and a cell-wall binding SH3_5 domain connected by a linker. Ca2+ ions are essential for the CHAP domain's catalytic function. The crystal structure of PlyGRCS, determined in the absence of Ca2+ and refined to a resolution of 1.67 Å, revealed significant conformational changes in the Ca2+ binding site. Antimicrobial assays with Ca2+-deficient PlyGRCS and mutants targeting key residues in the catalytic and Ca2+ binding regions highlighted the importance of specific functional residues for lytic activity against methicillin-resistant Staphylococcus aureus (MRSA). These structural and microbial studies provide valuable insights into the critical residues contributing to PlyGRCS's bacteriolytic efficacy against MRSA.

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Primary Citation of related structures