8XYB image
Deposition Date 2024-01-19
Release Date 2024-04-03
Last Version Date 2024-04-10
Entry Detail
PDB ID:
8XYB
Title:
hPhK gamma-delta subcomplex in inactive state
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform
Gene (Uniprot):PHKA1
Chain IDs:A
Chain Length:1223
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Phosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform
Gene (Uniprot):PHKG1
Chain IDs:C
Chain Length:387
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Calmodulin-1
Gene (Uniprot):CALM1
Chain IDs:B (auth: D)
Chain Length:149
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Architecture and activation of human muscle phosphorylase kinase.
Nat Commun 15 2719 2719 (2024)
PMID: 38548794 DOI: 10.1038/s41467-024-47049-2

Abstact

The study of phosphorylase kinase (PhK)-regulated glycogen metabolism has contributed to the fundamental understanding of protein phosphorylation; however, the molecular mechanism of PhK remains poorly understood. Here we present the high-resolution cryo-electron microscopy structures of human muscle PhK. The 1.3-megadalton PhK α4β4γ4δ4 hexadecamer consists of a tetramer of tetramer, wherein four αβγδ modules are connected by the central β4 scaffold. The α- and β-subunits possess glucoamylase-like domains, but exhibit no detectable enzyme activities. The α-subunit serves as a bridge between the β-subunit and the γδ subcomplex, and facilitates the γ-subunit to adopt an autoinhibited state. Ca2+-free calmodulin (δ-subunit) binds to the γ-subunit in a compact conformation. Upon binding of Ca2+, a conformational change occurs, allowing for the de-inhibition of the γ-subunit through a spring-loaded mechanism. We also reveal an ADP-binding pocket in the β-subunit, which plays a role in allosterically enhancing PhK activity. These results provide molecular insights of this important kinase complex.

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Primary Citation of related structures
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