8XXW image
Entry Detail
PDB ID:
8XXW
EMDB ID:
Title:
Fab M2-7 complexed with SARS-Cov2 RBD and human ACE2
Biological Source:
PDB Version:
Deposition Date:
2024-01-19
Release Date:
2024-06-19
Method Details:
Experimental Method:
Resolution:
3.03 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Processed angiotensin-converting enzyme 2
Chain IDs:A
Chain Length:581
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Spike protein S1
Chain IDs:B (auth: E)
Chain Length:180
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polypeptide(L)
Description:M2-7-Heavy chain
Chain IDs:C (auth: H)
Chain Length:120
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:M2-7-Light chain
Chain IDs:D (auth: L)
Chain Length:107
Number of Molecules:1
Biological Source:Mus musculus
Primary Citation
Mosaic RBD nanoparticle elicits immunodominant antibody responses across sarbecoviruses.
Cell Rep 43 114235 114235 (2024)
PMID: 38748880 DOI: 10.1016/j.celrep.2024.114235

Abstact

Nanoparticle vaccines displaying mosaic receptor-binding domains (RBDs) or spike (S) from severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) or other sarbecoviruses are used in preparedness against potential zoonotic outbreaks. Here, we describe a self-assembling nanoparticle using lumazine synthase (LuS) as the scaffold to display RBDs from different sarbecoviruses. Mosaic nanoparticles induce sarbecovirus cross-neutralizing antibodies comparable to a nanoparticle cocktail. We find mosaic nanoparticles elicit a B cell receptor repertoire using an immunodominant germline gene pair of IGHV14-3:IGKV14-111. Most of the tested IGHV14-3:IGKV14-111 monoclonal antibodies (mAbs) are broadly cross-reactive to clade 1a, 1b, and 3 sarbecoviruses. Using mAb competition and cryo-electron microscopy, we determine that a representative IGHV14-3:IGKV14-111 mAb, M2-7, binds to a conserved epitope on the RBD, largely overlapping with the pan-sarbecovirus mAb S2H97. This suggests mosaic nanoparticles expand B cell recognition of the common epitopes shared by different clades of sarbecoviruses. These results provide immunological insights into the cross-reactive responses elicited by mosaic nanoparticles against sarbecoviruses.

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Primary Citation of related structures