8XX0 image
Deposition Date 2024-01-17
Release Date 2024-07-31
Last Version Date 2024-10-30
Entry Detail
PDB ID:
8XX0
Keywords:
Title:
Crystal structure of anti-IgE antibody HMK-12 Fab complexed with IgE F(ab')2
Biological Source:
Source Organism:
Rattus norvegicus (Taxon ID: 10116)
Mus musculus (Taxon ID: 10090)
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:SPE7 immunoglobulin E F(ab')2 heavy chain
Chain IDs:C (auth: A)
Chain Length:321
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:SPE7 immunoglobulin E F(ab')2 light chain
Chain IDs:D (auth: B)
Chain Length:215
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:anti-IgE antibody HMK-12 Fab heavy chain
Chain IDs:B (auth: H)
Chain Length:225
Number of Molecules:1
Biological Source:Rattus norvegicus
Polymer Type:polypeptide(L)
Molecule:anti-IgE antibody HMK-12 Fab light chain
Chain IDs:A (auth: L)
Chain Length:214
Number of Molecules:1
Biological Source:Rattus norvegicus
Primary Citation
Allosteric inhibition of IgE-Fc epsilon RI interactions by simultaneous targeting of IgE F(ab')2 epitopes.
Commun Biol 7 1042 1042 (2024)
PMID: 39179708 DOI: 10.1038/s42003-024-06633-4

Abstact

Immunoglobulin E (IgE) plays pivotal roles in allergic diseases through interaction with a high-affinity receptor (FcεRI). We established that Fab fragments of anti-IgE antibodies (HMK-12 Fab) rapidly dissociate preformed IgE-FcεRI complexes in a temperature-dependent manner and inhibit IgE-mediated anaphylactic reactions, even after allergen challenge. X-ray crystallographic studies revealed that HMK-12 Fab interacts with each of two equivalent epitopes on the Cε2 homodimer domain involved in IgE F(ab')2. Consequently, HMK-12 Fab-mediated targeting of Cε2 reduced the binding affinity of Fc domains and resulted in rapid removal of IgE from the receptor complex. This unexpected finding of allosteric inhibition of IgE-FcεRI interactions by simultaneous targeting of two epitope sites on the Cε2 homodimer domain of IgE F(ab')2 may have implications for the development of novel therapies for allergic disease.

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Primary Citation of related structures