8XVA image
Deposition Date 2024-01-14
Release Date 2024-08-07
Last Version Date 2025-07-02
Entry Detail
PDB ID:
8XVA
Title:
Human TOM complex with whole Tom20
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
5.92 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Mitochondrial import receptor subunit TOM6 homolog
Gene (Uniprot):TOMM6
Chain IDs:A, F
Chain Length:74
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Mitochondrial import receptor subunit TOM40 homolog
Gene (Uniprot):TOMM40
Chain IDs:B, I
Chain Length:361
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Mitochondrial import receptor subunit TOM22 homolog
Gene (Uniprot):TOMM22
Chain IDs:C, H
Chain Length:142
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Mitochondrial import receptor subunit TOM5 homolog
Gene (Uniprot):TOMM5
Chain IDs:D, E
Chain Length:51
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Mitochondrial import receptor subunit TOM7 homolog
Gene (Uniprot):TOMM7
Chain IDs:G, J
Chain Length:55
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Mitochondrial import receptor subunit TOM20 homolog
Gene (Uniprot):TOMM20
Chain IDs:K
Chain Length:145
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structure of the intact Tom20 receptor in the human translocase of the outer membrane complex.
Pnas Nexus 3 pgae269 pgae269 (2024)
PMID: 39071881 DOI: 10.1093/pnasnexus/pgae269

Abstact

The translocase of the outer membrane (TOM) complex serves as the main gate for preproteins entering mitochondria and thus plays a pivotal role in sustaining mitochondrial stability. Precursor proteins, featuring amino-terminal targeting signals (presequences) or internal targeting signals, are recognized by the TOM complex receptors Tom20, Tom22, and Tom70, and then translocated into mitochondria through Tom40. By using chemical cross-linking to stabilize Tom20 in the TOM complex, this study unveils the structure of the human TOM holo complex, encompassing the intact Tom20 component, at a resolution of approximately 6 Å by cryo-electron microscopy. Our structure shows the TOM holo complex containing only one Tom20 subunit, which is located right at the center of the complex and stabilized by extensive interactions with Tom22, Tom40, and Tom6. Based on the structure, we proposed a possible translocation mode of TOM complex, by which different receptors could work simultaneously to ensure that the preproteins recognized by them are all efficiently translocated into the mitochondria.

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Primary Citation of related structures