8XSO image
Entry Detail
PDB ID:
8XSO
EMDB ID:
EMD-38624
Keywords:
TRANSCRIPTION/DNA/RNA
Title:
RNA polymerase II elongation complex transcribing genomic DNA extracted from human nuclei
Biological Source:
Source Organism:
Homo sapiens
Host Organism:
Homo sapiens
PDB Version:
Deposition Date:
2024-01-09
Release Date:
2025-05-07
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
8XSO validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase II subunit RPB1
Chain IDs:A
Chain Length:1970
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P24928 Pfam ID:PF04997, PF00623, PF04983, PF05000, PF04998, PF04992, PF04990, PF05001
Protein Blast
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase II subunit RPB2
Chain IDs:B
Chain Length:1174
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P30876 Pfam ID:PF04563, PF04561, PF04565, PF04566, PF04567, PF00562, PF04560
Protein Blast
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase II subunit RPB3
Chain IDs:C
Chain Length:292
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P19387 Pfam ID:PF01193, PF01000
Protein Blast
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase II subunit RPB4
Chain IDs:D
Chain Length:142
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:O15514 Pfam ID:PF03874
Protein Blast
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerases I, II, and III subunit RPABC1
Chain IDs:E
Chain Length:210
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P19388 Pfam ID:PF03871, PF01191
Protein Blast
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerases I, II, and III subunit RPABC2
Chain IDs:F
Chain Length:127
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P61218 Pfam ID:PF01192
Protein Blast
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase II subunit RPB7
Chain IDs:G
Chain Length:172
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62487 Pfam ID:PF03876, PF00575
Protein Blast
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerases I, II, and III subunit RPABC3
Chain IDs:H
Chain Length:150
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P52434 Pfam ID:PF03870
Protein Blast
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase II subunit RPB9
Chain IDs:I
Chain Length:125
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P36954 Pfam ID:PF02150, PF01096
Protein Blast
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerases I, II, and III subunit RPABC5
Chain IDs:J
Chain Length:67
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62875 Pfam ID:PF01194
Protein Blast
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase II subunit RPB11-a
Chain IDs:K
Chain Length:117
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P52435 Pfam ID:PF13656
Protein Blast
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerases I, II, and III subunit RPABC4
Chain IDs:L
Chain Length:58
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P53803 Pfam ID:PF03604
Polymer Type:polydeoxyribonucleotide
Description:DNA
Chain IDs:M (auth: N)
Chain Length:37
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Description:RNA
Chain IDs:N (auth: P)
Chain Length:11
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Description:DNA
Chain IDs:O (auth: T)
Chain Length:37
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
MG
ZN
Primary Citation
Multiple structures of RNA polymerase II isolated from human nuclei by ChIP-CryoEM analysis
To Be Published ? ? ? (?)
Primary Citation of related structures
8XSO