8XSD image
Entry Detail
PDB ID:
8XSD
EMDB ID:
Title:
BA.5 Spike complex with CR9
Biological Source:
PDB Version:
Deposition Date:
2024-01-09
Release Date:
2025-02-12
Method Details:
Experimental Method:
Resolution:
3.55 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Spike glycoprotein
Chain IDs:A, B, C
Chain Length:1289
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polypeptide(L)
Description:CR9 heavy chain
Chain IDs:D (auth: H), F (auth: G), H (auth: I)
Chain Length:115
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:CR9 light chain
Chain IDs:E (auth: L), G (auth: J), I (auth: K)
Chain Length:107
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
A broadly neutralizing antibody against the SARS-CoV-2 Omicron sub-variants BA.1, BA.2, BA.2.12.1, BA.4, and BA.5.
Signal Transduct Target Ther 10 14 14 (2025)
PMID: 39800731 DOI: 10.1038/s41392-024-02114-6

Abstact

The global spread of Severe Acute Respiratory Syndrome Coronavirus 2. (SARS-CoV-2) and its variant strains, including Alpha, Beta, Gamma, Delta, and now Omicron, pose a significant challenge. With the constant evolution of the virus, Omicron and its subtypes BA.1, BA.2, BA.3, BA.4, and BA.5 have developed the capacity to evade neutralization induced by previous vaccination or infection. This evasion highlights the urgency in discovering new monoclonal antibodies (mAbs) with neutralizing activity, especially broadly neutralizing antibodies (bnAbs), to combat the virus.In the current study, we introduced a fully human neutralizing mAb, CR9, that targets Omicron variants. We demonstrated the mAb's effectiveness in inhibiting Omicron replication both in vitro and in vivo. Structural analysis using cryo-electron microscopy (cryo-EM) revealed that CR9 binds to an epitope formed by RBD residues, providing a molecular understanding of its neutralization mechanism. Given its potency and specificity, CR9 holds promise as a potential adjunct therapy for treating Omicron infections. Our findings highlight the importance of continuous mAb discovery and characterization in addressing the evolving threat of COVID-19.

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Primary Citation of related structures