8XLH image
Deposition Date 2023-12-26
Release Date 2024-10-30
Last Version Date 2024-10-30
Entry Detail
PDB ID:
8XLH
Title:
Structure of chimeric RyR-I4657M/G4819E
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.62 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ryanodine receptor 1
Gene (Uniprot):RYR1
Mutations:R4563K, F4564Y,C4657M, L4792S,G4819E
Chain IDs:A, D, G (auth: C), J (auth: B)
Chain Length:5037
Number of Molecules:4
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:Peptidyl-prolyl cis-trans isomerase FKBP1B
Gene (Uniprot):FKBP1B
Chain IDs:B (auth: E), E (auth: H), H (auth: G), K (auth: F)
Chain Length:107
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Calmodulin-1
Gene (Uniprot):CALM1
Mutations:E32A, E68A, E105A, E141A
Chain IDs:C (auth: I), F (auth: L), I (auth: K), L (auth: J)
Chain Length:149
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Cryo-EM structures of ryanodine receptors and diamide insecticides reveal the mechanisms of selectivity and resistance.
Nat Commun 15 9056 9056 (2024)
PMID: 39428398 DOI: 10.1038/s41467-024-53490-0

Abstact

The resistance of pests to common insecticides is a global issue that threatens food production worldwide. Diamide insecticides target insect ryanodine receptors (RyRs), causing uncontrolled calcium release from the sarcoplasmic and endoplasmic reticulum. Despite their high potency and species selectivity, several resistance mutations have emerged. Using a chimeric RyR (chiRyR) approach and cryo-electron microscopy (cryo-EM), we investigate how insect RyRs engage two different diamide insecticides from separate families: flubendiamide, a phthalic acid derivative, and tetraniliprole, an anthranilic compound. Both compounds target the same site in the transmembrane region of the RyR, albeit with different poses, and promote channel opening through coupling with the pore-forming domain. To explore the resistance mechanisms, we also solve two cryo-EM structures of chiRyR carrying the two most common resistance mutations, I4790M and G4946E, both alone and in complex with the diamide insecticide chlorantraniliprole. The resistance mutations perturb the local structure, directly reducing the binding affinity and altering the binding pose. Our findings elucidate the mode of action of different diamide insecticides, reveal the molecular mechanism of resistance mutations, and provide important clues for the development of novel pesticides that can bypass the resistance mutations.

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