8XIZ image
Deposition Date 2023-12-20
Release Date 2024-02-07
Last Version Date 2025-05-21
Entry Detail
PDB ID:
8XIZ
Keywords:
Title:
Crystal structure of an epoxide hydrolase mutant A250IC/L344V from Aspergillus usamii E001 at 2.17 Angstroms resolution
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.18 Å
R-Value Free:
0.22
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Microsomal epoxide hyddrolase
Gene (Uniprot):EH2
Mutations:A250I,L344V
Chain IDs:A, B
Chain Length:431
Number of Molecules:2
Biological Source:Aspergillus usamii
Primary Citation
Rational mutagenesis of an epoxide hydrolase and its structural mechanism for the enantioselectivity improvement toward chiral ortho-fluorostyrene oxide.
Int.J.Biol.Macromol. 282 136864 136864 (2024)
PMID: 39476898 DOI: 10.1016/j.ijbiomac.2024.136864

Abstact

Chiral (S)-o-fluorostyrene oxide (oFSO) and vicinal diol (R)-o-fluorophenylethane-1,2-diol (oFPED) are important intermediates for synthesizing treatments for neuropathic diseases. This study aimed to engineer Aspergillus usamii epoxide hydrolase (AuEH2) through a rational mutagenesis strategy to customize high enantioselectivity mutant for rac-oFSO. Out of 181 single-site mutants screened, six showed elevated enantiomeric ratio (E value) ranging from 32 to 108 according to E value and activity mutability landscapes. By combinatorial mutagenesis of A250I with other five single-site mutants, we constructed five double-site mutants, with the best-performing mutant, D5 (A250I/L344V), achieving an E value of 180. This mutant enabled the efficient kinetic resolution of 400 mM rac-oFSO in pure water system using E. coli/Aueh2A250I/L344V, yielding (S)-oFSO (>99 % ees, 50 % yields) and (R)-oFPED (>99 % eep, 50 % yieldp) with space-time yields (STYs) of 331.5 and 376.1 g/L/d, respectively. Combining crystal structure resolution with theoretical computations clarified the enantioselectivity mechanism of D5, demonstrating that A250I reduced the funnel-shaped substrate binding pocket (SBP) while L344V extended its bottom, enhancing specific recognition of (R)-oFSO and inhibiting (S)-oFSO hydrolysis. These findings provide valuable insights for designing highly enantioselective enzyme mutants, advancing the field of asymmetric synthesis of chiral compounds using green biocatalytic processes.

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