8XI2 image
Deposition Date 2023-12-19
Release Date 2024-10-09
Last Version Date 2025-07-02
Entry Detail
PDB ID:
8XI2
Keywords:
Title:
Cryo-EM structure of the Chlamydomonas C* complex
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:RNA (173-mer)
Chain IDs:HA (auth: 3)
Chain Length:173
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polyribonucleotide
Molecule:RNA (5'-R(P*CP*CP*GP*AP*AP*CP*G)-3')
Chain IDs:GA (auth: 5)
Chain Length:7
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:MPN domain-containing protein
Gene (Uniprot):CHLRE_01g016050v5
Chain IDs:A
Chain Length:127
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polyribonucleotide
Molecule:U5 snRNA
Chain IDs:B
Chain Length:265
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Elongation factor Tu, chloroplastic
Gene (Uniprot):CHLRE_17g737250v5
Chain IDs:C
Chain Length:989
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:U5-40K
Gene (Uniprot):CHLRE_06g255400v5
Chain IDs:D (auth: E)
Chain Length:87
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polyribonucleotide
Molecule:U6 snRNA
Chain IDs:E (auth: F)
Chain Length:85
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polyribonucleotide
Molecule:U2 snRNA
Chain IDs:Y (auth: H)
Chain Length:192
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Syf1
Gene (Uniprot):CHLRE_12g513500v5
Chain IDs:Q (auth: I)
Chain Length:925
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Crooked neck protein
Gene (Uniprot):CHLRE_14g621000v5
Chain IDs:R (auth: J)
Chain Length:835
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Pre-mRNA-splicing factor SPF27
Gene (Uniprot):CHLRE_17g697350v5
Chain IDs:CA (auth: K)
Chain Length:303
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cdc5L
Gene (Uniprot):CHLRE_03g197350v5
Chain IDs:BA (auth: L)
Chain Length:833
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PPIase cyclophilin-type domain-containing protein
Gene (Uniprot):CHLRE_01g037400v5
Chain IDs:T (auth: M)
Chain Length:563
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:G10 protein
Gene (Uniprot):CHLRE_10g442400v5
Chain IDs:W (auth: N)
Chain Length:233
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Rbm22
Gene (Uniprot):CHLRE_02g075650v5
Chain IDs:V (auth: O)
Chain Length:417
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cwf15/Cwc15 cell cycle control protein
Gene (Uniprot):CHLRE_24g755447v5
Chain IDs:S (auth: P)
Chain Length:235
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Intron-binding protein aquarius
Gene (Uniprot):CHLRE_06g300750v5
Chain IDs:FA (auth: Q)
Chain Length:503
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SKI-interacting protein SKIP SNW domain-containing protein
Gene (Uniprot):CHLRE_01g051100v5
Chain IDs:X (auth: R)
Chain Length:684
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Peptidyl-prolyl cis-trans isomerase
Gene (Uniprot):CHLRE_12g499400v5
Chain IDs:Z (auth: S)
Chain Length:157
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PLRG1
Gene (Uniprot):CHLRE_10g446900v5
Chain IDs:U (auth: T)
Chain Length:518
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CWF21 domain-containing protein
Gene (Uniprot):CHLRE_09g409200v5
Chain IDs:DA (auth: U)
Chain Length:721
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:MI domain-containing protein
Gene (Uniprot):CHLRE_06g259800v5
Chain IDs:EA (auth: V)
Chain Length:928
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Prp17
Gene (Uniprot):CHLRE_04g226450v5
Chain IDs:AA (auth: W)
Chain Length:576
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small nuclear ribonucleoprotein Sm D3
Gene (Uniprot):CHLRE_10g455300v5
Chain IDs:J (auth: a)
Chain Length:127
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Sm domain-containing protein
Gene (Uniprot):CHLRE_14g611150v5
Chain IDs:P (auth: b)
Chain Length:265
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small nuclear ribonucleoprotein Sm D1
Gene (Uniprot):CHLRE_16g665400v5
Chain IDs:O (auth: c)
Chain Length:989
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small nuclear ribonucleoprotein Sm D2
Gene (Uniprot):CHLRE_10g453450v5
Chain IDs:N (auth: d)
Chain Length:110
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small nuclear ribonucleoprotein E
Gene (Uniprot):CHLRE_08g385200v5
Chain IDs:L (auth: e)
Chain Length:87
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Sm protein F
Gene (Uniprot):CHLRE_05g241300v5
Chain IDs:M (auth: f)
Chain Length:85
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small nuclear ribonucleoprotein G
Gene (Uniprot):CHLRE_13g566050v5
Chain IDs:K (auth: g)
Chain Length:77
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Pre-mRNA-processing factor 19
Gene (Uniprot):CHLRE_02g073650v5
Chain IDs:F (auth: q), G (auth: r), H (auth: s), I (auth: t)
Chain Length:503
Number of Molecules:4
Biological Source:Chlamydomonas reinhardtii
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SEP X SER modified residue
Primary Citation
Structure of a step II catalytically activated spliceosome from Chlamydomonas reinhardtii.
Embo J. 44 975 990 (2025)
PMID: 39415054 DOI: 10.1038/s44318-024-00274-3

Abstact

Pre-mRNA splicing, a fundamental step in eukaryotic gene expression, is executed by the spliceosomes. While there is extensive knowledge of the composition and structure of spliceosomes in yeasts and humans, the structural diversity of spliceosomes in non-canonical organisms remains unclear. Here, we present a cryo-EM structure of a step II catalytically activated spliceosome (C* complex) derived from the unicellular green alga Chlamydomonas reinhardtii at 2.6 Å resolution. This Chlamydomonas C* complex comprises 29 proteins and four RNA elements, creating a dynamic assembly that shares a similar overall architecture with yeast and human counterparts but also has unique features of its own. Distinctive structural characteristics include variations in protein compositions as well as some noteworthy RNA features. The splicing factor Prp17, with four fragments and a WD40 domain, is engaged in intricate interactions with multiple protein and RNA components. The structural elucidation of Chlamydomonas C* complex provides insights into the molecular mechanism of RNA splicing in plants and understanding splicing evolution in eukaryotes.

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Primary Citation of related structures
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