8XHW image
Entry Detail
PDB ID:
8XHW
Title:
Haloquadratum walsbyi middle rhodopsin mutant - D84N
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2023-12-18
Release Date:
2024-12-18
Method Details:
Experimental Method:
Resolution:
2.94 Å
R-Value Free:
0.27
R-Value Work:
0.23
R-Value Observed:
0.24
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Bacteriorhodopsin-II-like protein
Mutations:D84N
Chain IDs:A, B, C, D
Chain Length:246
Number of Molecules:4
Biological Source:Haloquadratum walsbyi DSM 16790
Ligand Molecules
Primary Citation
Rhodopsin from Haloquadratum walsbyi is a light-driven magnesium transporter.
Nat Commun 16 4472 4472 (2025)
PMID: 40368960 DOI: 10.1038/s41467-025-59795-y

Abstact

The functionally unknown Middle rhodopsin (HwMR) is a microbial rhodopsin (mRho) identified in Haloquadratum walsbyi, an archaeon that thrives in a 2 M MgCl2 environment harmful to most other microorganisms. HwMR shares conserved and functionally critical residues with both bacteriorhodopsin (BR), a proton pump, and sensory rhodopsin II (SRII), which mediates phototaxis, even though HwMR exerts neither function. We previously reported HwMR as a unique mRho found to associate with Mg2+. Here, we show that HwMR can sense environmental Mg2+ concentration via the D84 residue according to characteristic maximum absorption wavelength shift, photocycle kinetics, and Mg2+ titration assay. X-ray crystallography of the wild-type HwMR and its D84N mutant produced two HwMR atomic structure models. Omit maps analysis of the wild-type HwMR model revealed D84 as a Mg2+ binding site. On the cytoplasmic side, omit maps also revealed Mg2+ association with T216. Both Mg2+ sites were absent in the D84N mutant. A cell-based light-driven conductivity assay provided evidence to propose that HwMR is an inward magnesium transporter, with D84 as the primary binding site and T216 as the transportation stabilizing site. A sequential model was proposed to illustrate Mg2+ transportation in HwMR.

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Primary Citation of related structures