8XGR image
Entry Detail
PDB ID:
8XGR
EMDB ID:
Title:
ETB-eGt complex bound to endothelin-1
Biological Source:
PDB Version:
Deposition Date:
2023-12-15
Release Date:
2024-04-03
Method Details:
Experimental Method:
Resolution:
3.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
Chain IDs:B
Chain Length:374
Number of Molecules:1
Biological Source:Rattus rattus
Polymer Type:polypeptide(L)
Description:Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2,eGt-alpha
Chain IDs:A (auth: G)
Chain Length:434
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:Endothelin-1
Chain IDs:E (auth: L)
Chain Length:21
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Camelid antibody VHH fragment
Chain IDs:C (auth: N)
Chain Length:161
Number of Molecules:1
Biological Source:Lama glama
Polymer Type:polypeptide(L)
Description:Endothelin receptor type B
Chain IDs:D (auth: R)
Chain Length:609
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Optimizing cryo-EM structural analysis of G i -coupling receptors via engineered G t and Nb35 application.
Biochem.Biophys.Res.Commun. 693 149361 149361 (2024)
PMID: 38128244 DOI: 10.1016/j.bbrc.2023.149361

Abstact

Cryo-EM single particle analysis has recently facilitated the high-resolution structural determination of numerous GPCR-G complexes. Diverse methodologies have been devised with this trend, and in the case of GPCR-Gi complexes, scFv16, an antibody that recognizes the intricate interface of the complex, has been mainly implemented to stabilize the complex. However, owing to their flexibility and heterogeneity, structural determinations of GPCR-Gi complexes remain both challenging and resource-intensive. By employing eGαt, which exhibits binding affinity to modified nanobody Nb35, the cryo-EM structure of Rhodopsin-eGαt complex was previously reported. Using this modified G protein, we determined the structure of the ETB-eGt complex bound to the modified Nb35. The determined structure of ETB receptor was the same as the previously reported ETB-Gi complex, and the resulting dataset demonstrated significantly improved anisotropy. This modified G protein will be utilized for the structural determination of other GPCR-Gi complexes.

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Primary Citation of related structures